Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F12
         (956 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     31   1.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              31   1.8  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   1.8  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   7.4  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   7.4  

>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
           PPPPG      G P P PP   P     G  N  P P
Sbjct: 358 PPPPGRAPQPLGGPPPPPPGRRPPS---GKINPPPPP 391



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/63 (28%), Positives = 20/63 (31%)
 Frame = +2

Query: 404 KNPPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXX 583
           +N PPP       G   P PP   P P   G  N  P P             P   P   
Sbjct: 247 ENRPPPPMRGPTSGGEPP-PPKNAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRD 305

Query: 584 RAP 592
           +AP
Sbjct: 306 QAP 308


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
           PPPPG      G P P PP   P     G  N  P P
Sbjct: 270 PPPPGRAPQPLGGPPPPPPGRRPPS---GKINPPPPP 303



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/63 (28%), Positives = 20/63 (31%)
 Frame = +2

Query: 404 KNPPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXX 583
           +N PPP       G   P PP   P P   G  N  P P             P   P   
Sbjct: 159 ENRPPPPMRGPTSGGEPP-PPKNAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRD 217

Query: 584 RAP 592
           +AP
Sbjct: 218 QAP 220


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
           PPPPG      GAP P PP   P P   G G   P P
Sbjct: 307 PPPPG------GAPPPPPPPPPPPP---GDGGAPPPP 334


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXP 544
           PPPP         P P PP   P P   G     P PQ    G P
Sbjct: 699 PPPPPLLSGTLPMPPPPPP---PPPGCAGLPPPPPSPQPGCAGLP 740


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPP-----XXTPXPRFLGXGNXXPXP 520
           PPPP       GAP P PP        P P  +G G   P P
Sbjct: 663 PPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPP 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,728
Number of Sequences: 59808
Number of extensions: 155865
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2812459436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)