Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F12
         (956 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB007829-1|BAA86201.1|  606|Homo sapiens CSR1 protein.                 36   0.29 
DQ205185-1|ABA27098.1|  606|Homo sapiens scavenger receptor clas...    33   1.2  
BC075068-1|AAH75068.1|  606|Homo sapiens scavenger receptor clas...    33   1.2  
BC075067-1|AAH75067.1|  606|Homo sapiens scavenger receptor clas...    33   1.2  

>AB007829-1|BAA86201.1|  606|Homo sapiens CSR1 protein.
          Length = 606

 Score = 35.5 bits (78), Expect = 0.29
 Identities = 19/64 (29%), Positives = 23/64 (35%)
 Frame = -2

Query: 601 GPXGGPXVXXFXXGXXPXXWXTXXXPLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXP 422
           GP G P +        P        P+G   PV P   PG +   G    GGP+  P   
Sbjct: 481 GPKGDPGILGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540

Query: 421 GGXG 410
           G  G
Sbjct: 541 GDIG 544


>DQ205185-1|ABA27098.1|  606|Homo sapiens scavenger receptor class
           A, member 3 protein.
          Length = 606

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = -2

Query: 601 GPXGGPXVXXFXXGXXPXXWXTXXXPLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXP 422
           GP G P          P        P+G   PV P   PG +   G    GGP+  P   
Sbjct: 481 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540

Query: 421 GGXG 410
           G  G
Sbjct: 541 GDIG 544


>BC075068-1|AAH75068.1|  606|Homo sapiens scavenger receptor class
           A, member 3 protein.
          Length = 606

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = -2

Query: 601 GPXGGPXVXXFXXGXXPXXWXTXXXPLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXP 422
           GP G P          P        P+G   PV P   PG +   G    GGP+  P   
Sbjct: 481 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540

Query: 421 GGXG 410
           G  G
Sbjct: 541 GDIG 544


>BC075067-1|AAH75067.1|  606|Homo sapiens scavenger receptor class
           A, member 3 protein.
          Length = 606

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = -2

Query: 601 GPXGGPXVXXFXXGXXPXXWXTXXXPLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXP 422
           GP G P          P        P+G   PV P   PG +   G    GGP+  P   
Sbjct: 481 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540

Query: 421 GGXG 410
           G  G
Sbjct: 541 GDIG 544


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,643,235
Number of Sequences: 237096
Number of extensions: 1317346
Number of successful extensions: 5626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5287
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)