Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_F12
(956 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.043
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.043
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.92
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.8
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 8.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.043
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = +2
Query: 413 PPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRAP 592
PPP + P P PP TP P G P P G P G P P R P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.043
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = +2
Query: 413 PPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRAP 592
PPP + P P PP TP P G P P G P G P P R P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.92
Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRA 589
PPP G FGAP PP P G P PQ P G P P A
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQGGPPQGSFG----APPPQQFHAPSPQSFGGP--PPPVSSA 374
Query: 590 PXR-AXNP*KGP 622
P A P GP
Sbjct: 375 PGNFAPPPQSGP 386
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKP 574
PPPPG G P P PP P P G P P G P G P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGG-----PPPPPPPGGLPPISGGPPPPP 762
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
PPPPG G P P PP P + G P P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKP 574
PPPPG G P P PP P P G P P G P G P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGG-----PPPPPPPGGLPPISGGPPPPP 762
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
PPPPG G P P PP P + G P P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKP 574
PPPPG G P P PP P P G P P G P G P P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLP-PITGG-----PPPPPPPGGLPPISGGPPPPP 345
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
PPPPG G P P PP P + G P P
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPP 346
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +2
Query: 404 KNPPPPGXXXXXFGAPXPXP-PXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXX 580
K+ P P F P P P P P + P P+ + P + P KP
Sbjct: 5 KSKPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPML 64
Query: 581 XRAPXRAXNP*KGPXWWLFP 640
P P P LFP
Sbjct: 65 FPKPMPKHKPKPFPKPMLFP 84
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXR- 586
PPP G A P PP P PR P PQ P G P P R
Sbjct: 282 PPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Query: 587 APXRA 601
AP R+
Sbjct: 339 APERS 343
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXR- 586
PPP G A P PP P PR P PQ P G P P R
Sbjct: 303 PPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Query: 587 APXRA 601
AP R+
Sbjct: 360 APERS 364
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXR- 586
PPP G A P PP P PR P PQ P G P P R
Sbjct: 288 PPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Query: 587 APXRA 601
AP R+
Sbjct: 345 APERS 349
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 526 PLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXPGGXG 410
P G P P PG G GP P PGG G
Sbjct: 203 PAGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPG 241
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 526 PLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXPGGXG 410
P G P P PGA G GP P PG G
Sbjct: 140 PAGEAGPAGPDGAPGAPGPDGQPGQDGPAGQPGAPGPAG 178
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 526 PLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXPGGXG 410
P G P P PG G GP P PGG G
Sbjct: 203 PSGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPG 241
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 526 PLGXXXPVPPTQKPGARXXXGXXXXGGPKXXPXXPGG 416
P G P P PG G GGP+ P PGG
Sbjct: 151 PAGGPGPKGPPGPPGGHGEPGPAGRGGPRGPP-GPGG 186
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXP 520
PPPP GAP P PP P P G P P
Sbjct: 563 PPPPPLPQNLSGAPPPPPP---PPPMLGGPPPPPPPP 596
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,905
Number of Sequences: 27780
Number of extensions: 153520
Number of successful extensions: 761
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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