Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F12
         (956 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.5  
At4g33660.1 68417.m04781 expressed protein                             30   2.0  
At1g54215.1 68414.m06180 proline-rich family protein contains pr...    29   6.0  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   8.0  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   8.0  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 18/61 (29%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRA 589
           PPPP      +  P P PP   P P +       P P       P     P   P     
Sbjct: 454 PPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPP 513

Query: 590 P 592
           P
Sbjct: 514 P 514



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/109 (22%), Positives = 29/109 (26%)
 Frame = +2

Query: 389 VFSX*KNPPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXX 568
           V+S    PP P         P P PP   P P+F       P P       P     P  
Sbjct: 517 VYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQF---SPPPPEPYYYSSPPPPHSSPPPH 573

Query: 569 KPXXXRAPXRAXNP*KGPXWWLFPIGXXXXXXXXQKXPXPQXQRVAXPP 715
            P    +P     P   P     P+            P P       PP
Sbjct: 574 SPPPPHSPPPPIYPYLSPPPPPTPVSSPPPTPVYSPPPPPPCIEPPPPP 622



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/74 (24%), Positives = 22/74 (29%)
 Frame = +2

Query: 407 NPPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXR 586
           +PPPP        +P P PP   P P +       P P       P     P   P    
Sbjct: 437 SPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYS 496

Query: 587 APXRAXNP*KGPXW 628
            P     P   P +
Sbjct: 497 PPPPPPPPPPPPVY 510



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/103 (22%), Positives = 28/103 (27%)
 Frame = +2

Query: 407 NPPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXR 586
           +PPPP      +  P P PP   P P +       P P       P     P   P    
Sbjct: 425 SPPPPSPPPPVYSPPPPPPP---PPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYS 481

Query: 587 APXRAXNP*KGPXWWLFPIGXXXXXXXXQKXPXPQXQRVAXPP 715
            P  +  P   P +   P             P P       PP
Sbjct: 482 PPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPP 524


>At4g33660.1 68417.m04781 expressed protein
          Length = 76

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 404 KNPPPPGXXXXXFGAPXPXPPXXTPXPRFLG 496
           + PPPP      +  P P PP   P PR +G
Sbjct: 18  QGPPPPVGVPPQYYPPPPPPPPPPPPPRKVG 48


>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/71 (26%), Positives = 22/71 (30%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRA 589
           PPPP             PP   P    +   +  P PQ      P  R  P  KP     
Sbjct: 58  PPPPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQ------PPPRSQPPPKPPQKNL 111

Query: 590 PXRAXNP*KGP 622
           P R   P + P
Sbjct: 112 PRRHPPPPRSP 122


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/77 (24%), Positives = 24/77 (31%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGNXXPXPQXRXXGXPXXRGXPXXKPXXXRA 589
           PPPP         P P PP   P P ++      P P       P     P   P     
Sbjct: 382 PPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPP-PPPYVYPPPPSP 440

Query: 590 PXRAXNP*KGPXWWLFP 640
           P     P   P  +++P
Sbjct: 441 PYVYPPPPPSPQPYMYP 457


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 410 PPPPGXXXXXFGAPXPXPPXXTPXPRFLGXGN 505
           PPPP        +P   PP   P P F   GN
Sbjct: 602 PPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGN 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,069
Number of Sequences: 28952
Number of extensions: 120802
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)