Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F11
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.50 
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   1.2  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.7  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   6.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   8.2  

>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 293 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 430
           KDG+++   +LN FAK L  +    + +A +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 272 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 427
           +D + A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN++   E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 404 ASTVPKPPWPCRSRLRALPG 345
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 447 LNVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAK 614
           LN   +   +REK+Q+  +   + S KL    +  V++ +++   K    Y DFAK
Sbjct: 120 LNNSLSPAEIREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNY-DFAK 174


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 483 KLQAAVQNTVQESQKLAKKVSSNVQET-----NEKLAPKIKAAYDDFAKNTQEVIQKIQE 647
           +L+  +  T+ + Q+ AK      QE      N K + K+    +D AKN   V+QK+ E
Sbjct: 4   RLKDQLNMTLAQGQEEAKNRRRQFQEEDQLRRNNKSSNKLSQNEED-AKNMDSVVQKLNE 62

Query: 648 AAN 656
             N
Sbjct: 63  LQN 65


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 537 KVSSNVQET--NEKLAPKIKAAYD 602
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,657
Number of Sequences: 5004
Number of extensions: 35491
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)