Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F11
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39420.1 68418.m04775 protein kinase family protein contains ...    31   1.3  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    29   4.1  
At2g48160.1 68415.m06031 PWWP domain-containing protein                29   4.1  
At5g06160.1 68418.m00687 splicing factor-related contains some s...    29   5.4  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    29   5.4  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    28   7.2  
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro...    28   9.5  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    28   9.5  
At2g01220.2 68415.m00035 expressed protein                             28   9.5  
At2g01220.1 68415.m00034 expressed protein                             28   9.5  
At1g26650.1 68414.m03245 expressed protein                             28   9.5  

>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 275 DFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 430
           DFS+  +D  +  L+ L    +S+ G L   +GK  E L+++  NI +   +
Sbjct: 583 DFSQREEDSPKKTLEHLQFGKQSISGPLIFKSGKIDEILQRNESNIRQAVRK 634


>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
            family protein similar to SP|P50532 Chromosome assembly
            protein XCAP-C {Xenopus laevis}; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +3

Query: 450  NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEV 629
            N+EK +  L++KLQ  ++N   E  K  K     +Q   +K   +I         N Q++
Sbjct: 817  NLEKGSKQLKDKLQTNIENAGGEKLKGQKAKVEKIQTDIDKNNTEINRCNVQIETN-QKL 875

Query: 630  IQK----IQEAANAKQ 665
            I+K    I+EA   K+
Sbjct: 876  IKKLTKGIEEATREKE 891


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 62   PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPH 208
            P+R++  LS ST+H+ G +    S ++L  S P++DG+  + R    H  PH
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPH 1235


>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +2

Query: 71  ISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL*XQQFNS 250
           +SS L   T  +  +V    RL     + +  + + RL+QGHR  H   SI L  ++   
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 251 LTKSKDAQDFSKAWKD 298
             + KD      AW D
Sbjct: 61  TYEDKDG-----AWDD 71


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 140 RSGPRSDGATRRSRLLQGHRTPHQGSSIRL*XQQFNSLTKSKDAQDFSKAWKDGSESVLQ 319
           R+G RSD    +  +    RT    SSI L     N+ TK +  + +++ W+      +Q
Sbjct: 103 RTGLRSDICVMKGDV----RTNSASSSIFLFTSSTNNNTKPEKIKPYTRKWETSVMDTVQ 158

Query: 320 QLNAFAK 340
           +LN   K
Sbjct: 159 ELNLITK 165


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 453 VEKNATALREKLQAAVQN---TVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKN 617
           + K     R KL+  V N   TV + +KLAKK+S    E  EK+   +K A +   +N
Sbjct: 576 IMKEKIDARNKLETYVYNMKSTVADKEKLAKKIS---DEDKEKMEGVLKEALEWLEEN 630


>At5g07780.1 68418.m00890 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 464

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 440 PCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 336
           P   PRPC+R   +     P     + RALPG  W
Sbjct: 61  PPPLPRPCSRPPKTKCSLKPLHWVKKTRALPGSLW 95


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 471 ALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIQKIQE 647
           AL E+L+   Q   ++ QKLAK +    +   E+ AP I+AAY       +E  ++ Q+
Sbjct: 666 ALTEQLKER-QEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQ 723


>At2g01220.2 68415.m00035 expressed protein 
          Length = 388

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 476 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 381
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 227 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 258


>At2g01220.1 68415.m00034 expressed protein 
          Length = 387

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 476 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 381
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 226 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 257


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 361 SERSLETLGEGVELLQHGLGAVLPSLAEVLC 269
           S  +LE L E V +L++ LGA++ + A ++C
Sbjct: 24  SSNALEILRETVRILRYNLGALMLTTAVLIC 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,942
Number of Sequences: 28952
Number of extensions: 210908
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)