Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F09
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   3.7  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    27   4.9  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 615 GKLNLFRSPSSSLDFNAGXQEV*YAFLQIFVGANVGSLLE 734
           GK+N     S SL+F+ G  +  YA L   +  N  SL E
Sbjct: 300 GKVNFSLEDSESLEFDEGSDDYDYAKLTTELVGNTDSLAE 339


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -2

Query: 362 GSARARLHCPERAPAETALSLWRSLKSADPMALSTFLSLP 243
           GS+R  LHC      ET L +W   K      LST LS P
Sbjct: 8   GSSRTWLHCKYIQLKETKLEIWYLEKKKSTGDLST-LSAP 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,773
Number of Sequences: 5004
Number of extensions: 42858
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)