Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F09
         (915 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4) precu...    32   2.5  
D80001-1|BAA11496.1|  762|Homo sapiens KIAA0179 protein.               32   3.3  
BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processin...    32   3.3  
BC028195-1|AAH28195.1|  182|Homo sapiens chromosome 12 open read...    32   3.3  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    31   7.7  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    31   7.7  

>AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4)
           precursor protein-binding, family A, member 3 variant
           protein.
          Length = 337

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
 Frame = -1

Query: 627 GSAYPRPSSHSG**RQSAPRSTMRPPSV*TCSPLRRPXXXXXXXXXXXXXXXXXRTPLAL 448
           G   PRP +     R +   +  +PP + +  PL  P                     +L
Sbjct: 191 GIVRPRPLAPGWGGRAALSTAPEQPPPL-SRPPLFSPRSAASSVVASPSVGASASATASL 249

Query: 447 RSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLS---RASPC 319
           RS   +W     PA+ SCSP+P  R   R    P   S   R+SPC
Sbjct: 250 RSMGRVWWPRHTPASSSCSPRPMARCISRRCQLPHIASLQARSSPC 295


>D80001-1|BAA11496.1|  762|Homo sapiens KIAA0179 protein.
          Length = 762

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 LTSSTGMTTRPGVS*TCSDLRPARSTSTPGFKKFDTPF 693
           L S  G     G S TCS L+  +  +   F KFDTPF
Sbjct: 616 LESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPF 653


>BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processing 1
           homolog B (S. cerevisiae) protein.
          Length = 758

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 LTSSTGMTTRPGVS*TCSDLRPARSTSTPGFKKFDTPF 693
           L S  G     G S TCS L+  +  +   F KFDTPF
Sbjct: 612 LESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPF 649


>BC028195-1|AAH28195.1|  182|Homo sapiens chromosome 12 open reading
           frame 33 protein.
          Length = 182

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
 Frame = -2

Query: 530 HSAAQRVEVGRVGNGAGRV---------PDRERPWRSGRGCCCGTN*PCLRRRAAPRSRE 378
           HSAA   E G +G G+G V         P R+R    G   C G +    R      S  
Sbjct: 104 HSAAAAGESGDIGPGSGAVEAPGRGARRPTRQREDGGGAVGCFGVSRHRGREAQMSHSSH 163

Query: 377 CGSRSGSARA 348
           CGSRS SA A
Sbjct: 164 CGSRSCSAAA 173


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 459  PLALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCP 346
            P  L S L + +  + P TP+ S KP    PVRLSP P
Sbjct: 1083 PQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAP 1120


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
           SRCAP protein.
          Length = 2971

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 459 PLALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCP 346
           P  L S L + +  + P TP+ S KP    PVRLSP P
Sbjct: 886 PQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAP 923


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,626,940
Number of Sequences: 237096
Number of extensions: 1824942
Number of successful extensions: 5143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5141
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)