Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F09
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    32   0.66 
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    29   4.6  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 429  WNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRAS 325
            W K T   TPS S KP +  P R  P P   S+ S
Sbjct: 1980 WAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRS 2014


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 452 RSGRGCCCGTN*PCLRRRAAPRSRECGSRSGSARARLHCPERAPAETALSLW-RSLKSAD 276
           R G    CG+    +  R+    R+CGS  G     L C    P      LW + ++ A+
Sbjct: 296 RCGHSRLCGSYVARIENRSISPCRKCGSVEGDVNHLLTCISSVPL-LPKDLWEKPVEVAE 354

Query: 275 PMALST 258
            + LST
Sbjct: 355 ALGLST 360


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 453 PRAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHSDVINRNDYSA 611
           P  +  + SPS +PNAP      GG+DY+   +   + + A++  I   D+ A
Sbjct: 197 PIFYVTQLSPSIVPNAPK-----GGIDYVVLNEYIPTKNKANTPEIRTGDHFA 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,316
Number of Sequences: 27780
Number of extensions: 264276
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)