Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F09
         (915 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48590.1 68418.m06010 expressed protein                             29   4.3  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    29   5.7  
At3g03230.1 68416.m00319 esterase/lipase/thioesterase family pro...    29   5.7  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    28   9.9  
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    28   9.9  

>At5g48590.1 68418.m06010 expressed protein
          Length = 344

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 410 LRRRAAPRSRECGSRSGSARARLHCPERAPAETALSLWRSLKS--ADPMALSTFL 252
           LRR A PRS E  S        L  PE +  E+ ++ + SLK    + +A  TFL
Sbjct: 263 LRRCAKPRSHEAKSLIEKQSLALFGPEESSKESIVTSFSSLKRLLLEAVAFGTFL 317


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 431 CGTN*PCLRRRAAPRSRECGSRSGSARARLHC 336
           CGT  PC        S+ CG  SG +RAR  C
Sbjct: 284 CGTPEPCGPYYVCSGSKVCGCVSGLSRARSDC 315


>At3g03230.1 68416.m00319 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 333

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 425 FHNNNHDLSAKGVRDQELAQRHSQRAQLQHAGRRSGLHVQTE 550
           F N+ +       RD ELA++H++ + ++ +  R G +V T+
Sbjct: 208 FPNSRNPKDTMTERDLELAEKHTKHSYIKESALRQGGYVTTQ 249


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 653 ERAGRRSEQVQLTP-GXXXXXXXXXXXXRAQRCAHLLFEHVVHSAAQRVEVGRVGNGAGR 477
           ++AG R   VQL P G              +   H L ++++    +   VG+ GN    
Sbjct: 602 QKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRREESVGKKGNSDSS 661

Query: 476 VPDR 465
           +P+R
Sbjct: 662 IPER 665


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +2

Query: 323 GLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNLFHNNNHDLSAKGVRDQELAQRHSQRA 502
           G  + +  GHG+   G    G   Q    G   + H   H +  + +   +   RH  + 
Sbjct: 165 GHGMQHQGGHGMQHQGMH--GMQHQ----GGHGMEHQGGHGMQHQDMHGMQHQGRHGMQH 218

Query: 503 QLQHAGRRSGLH-VQTEGG-RIVERG 574
           Q  H  +  G+H +Q +GG RI  +G
Sbjct: 219 QGGHEMQHQGMHGMQHQGGHRIQHQG 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,233
Number of Sequences: 28952
Number of extensions: 249842
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)