Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F07
         (1075 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.039
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 20/40 (50%), Positives = 20/40 (50%)
 Frame = +2

Query: 305 PPPXLXGGGEXPXXPPFCLXXPPPXWGGGGXGXXPPPPPP 424
           PPP    GG  P  PP     PPP  G  G G  PPPPPP
Sbjct: 752 PPPAPIMGGPPP--PP-----PPP--GVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 305 PPPXLXGGGEXPXXPPFCLXXPPPXWGGGGXGXXPPP 415
           PPP + G G  P  PP     PP    GG     P P
Sbjct: 766 PPPGVAGAGPPPPPPP-----PPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 347 PPFCLXXPPPXWGGGGXGXXPPPPPP 424
           PP     PPP  G       PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = -2

Query: 447 NHXXFXCXGGGGGGXXPXPPPPQXG-----GGXXKQKGGXXGXSPPPXNXGGGXXXF 292
           N   F   GGG GG  P P P   G     GG     GG  G    P    GG   F
Sbjct: 186 NGGGFGGFGGGSGG--PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = -2

Query: 447 NHXXFXCXGGGGGGXXPXPPPPQXGGGXXKQKGGXXGXSPPPXNXGGG 304
           +H      GGG GG    P     GGG     GG  G    P   GGG
Sbjct: 219 HHGGHGGFGGGPGGFEGGPGG--FGGGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -1

Query: 418 GGGGXXAXPPPPPXGGGXXQTKGGGXXXFPPAAQXGGGXXXF 293
           G GG    PPP P G G     GG           GGG   F
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 371 PPXWGGGGXGXXPPPPPP 424
           PP   G      PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,539
Number of Sequences: 5004
Number of extensions: 23325
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)