Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F06
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.3  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.3  
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    26   8.4  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 48  CHSCLKQRNLTQVKMNSKLLYFFATVL-VCVNAEVYWEDEEGYPVSGQFSKRHPRDVT 218
           C S LK   L  VK +  L     + L +C N+  +W   + +     F K   ++VT
Sbjct: 246 CESILKDYLLNLVKTSESLSSQQMSCLRICCNSSSFWSAADSFKEVSSFLKNLLKNVT 303


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 545 FETIPPAERRVFLSRSHTPEPVAV 474
           +ET PP+ERRV L R+   EP A+
Sbjct: 117 YETSPPSERRV-LDRTSKEEPWAL 139


>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 377 PCGSQDPGAVGLPGQFAAVIIEDLSVV 297
           PC SQ PG +    QFAA  I  + VV
Sbjct: 42  PCSSQVPGYIANEKQFAAKGISGIYVV 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,916
Number of Sequences: 5004
Number of extensions: 68125
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)