Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F06
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            33   0.24 
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.96 
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               30   2.9  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   8.9  

>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -1

Query: 587 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 408
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 407 SRRPP*FVLSP-CGSQDPGAVGLPGQFA 327
              PP  V +P  G   P A   P  FA
Sbjct: 476 VAAPPPSVFAPSSGVPTPVAAPPPSVFA 503



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -1

Query: 587 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 408
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 407 SRRPP*FVLSP-CGSQDPGAVGLPGQFAA 324
              PP  V +P  G   P A   P  FA+
Sbjct: 418 VAAPPPSVFAPSSGVPTPVAAPPPSVFAS 446



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 587 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAA 429
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   +A
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSA 573


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 507 QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS*LVIKKIPSRHHRS 638
           + H P   R      RS+  RRRR  R P      + PS HHRS
Sbjct: 212 RSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 353
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 340 GRPTAPGSWDPQGDSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGSGVWDLDKNTR 519
           GR T+P SWD + D + + G L   + N   A       G  SG+++  S  +     + 
Sbjct: 383 GRTTSP-SWDYRPDMSPFHGTLTSPSGNVYVATTDEFTSGHASGLSSAASSGFTSAPGSE 441

Query: 520 LSAGGMV 540
            S GG +
Sbjct: 442 TSDGGFI 448


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 474  DSNRLRSVGS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS 596
            D+ +LR V    E PPL  RYG  G+  +K R R PG+ P+
Sbjct: 2322 DAIKLRRVPLKAEKPPLRGRYG--GVHRRK-RGRPPGQGPT 2359


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 180 SGQFSKRHPRDVTWDKQVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR 359
           S   S+  P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 360 V 362
           V
Sbjct: 752 V 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,020,474
Number of Sequences: 59808
Number of extensions: 558458
Number of successful extensions: 1316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)