Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F05
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    30   0.51 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   8.3  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   8.3  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 230 LRDSHSPARPFEGNTELNVHLSGIFSFGKCCPV 132
           +RD H PA  F+  TEL  HL   FS G+C  V
Sbjct: 84  VRD-HDPAAAFKQQTELAQHLYREFSSGRCTGV 115


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 276 HCGTSHGPTWS---TKSWTSGFSQSGSAI 199
           + GT H P+WS   + +W +G S  G AI
Sbjct: 45  YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 RATFSKRENARKVNIQFCI 191
           R T ++RE ARKV  +FCI
Sbjct: 337 RPTETEREYARKVTAEFCI 355


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +3

Query: 69  ENVSNEKFYCIVVCCGSCRLRHRATFSKRENARKVNIQFCIALKWPSRTVRIPKSTISLT 248
           EN   ++F C       C L + AT++      K N   C  LK  +  V   K  +S T
Sbjct: 145 ENNEQKEFECTSTAITGCLLNYGATYNYDHTLFKDNGLSCETLKLYTLEVHSKKKDVSDT 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,274
Number of Sequences: 5004
Number of extensions: 58369
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)