Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F04
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   128   8e-31
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   128   8e-31
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    40   7e-04
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   3.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   8.6  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  128 bits (310), Expect = 8e-31
 Identities = 59/93 (63%), Positives = 76/93 (81%)
 Frame = +3

Query: 156 EAVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 335
           +A++NCADN+G K + + S       RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V
Sbjct: 22  QAIMNCADNSGAKNLYIVSVF-GTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIV 80

Query: 336 IRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
           +RQRK +RR+DGV++YFEDNAGVIVN KG  +G
Sbjct: 81  VRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +1

Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
           +GEMKGSAITGPVAKECADLWPRIAS
Sbjct: 108 KGEMKGSAITGPVAKECADLWPRIAS 133


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  128 bits (310), Expect = 8e-31
 Identities = 59/93 (63%), Positives = 76/93 (81%)
 Frame = +3

Query: 156 EAVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 335
           +A++NCADN+G K + + S       RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V
Sbjct: 22  QAIMNCADNSGAKNLYIVSVF-GTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIV 80

Query: 336 IRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
           +RQRK +RR+DGV++YFEDNAGVIVN KG  +G
Sbjct: 81  VRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +1

Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
           +GEMKGSAITGPVAKECADLWPRIAS
Sbjct: 108 KGEMKGSAITGPVAKECADLWPRIAS 133


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
 Frame = +3

Query: 255 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 407
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 408 VNNK 419
           VN +
Sbjct: 91  VNKE 94


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
 Frame = -2

Query: 406  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 227
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 226  IXLDC----DHIQISLPPVLSAQLITASHWET 143
              L          I+ P ++S   I AS + T
Sbjct: 837  TPLSAALGSAAQSITSPLIMSPAAIPASAYST 868


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 288 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 398
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 273 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEGLGHHRA 452
           IV    KGK  L   + P++ I       R  G  +Y ED  GV      R   L +  +
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV-----QRYISLDNRAS 363

Query: 453 CS-QRMC*SVAAYCLKTRAL*LEYT 524
            S  + C SV  Y L  R   + YT
Sbjct: 364 NSLVKWCLSVIRYVLPLREYEIFYT 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,707
Number of Sequences: 5004
Number of extensions: 40898
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)