Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F04
         (917 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          128   8e-30
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)                 29   5.3  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  128 bits (308), Expect = 8e-30
 Identities = 63/87 (72%), Positives = 73/87 (83%)
 Frame = +3

Query: 159 AVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 338
           AVINCADNTGGK + + +  K IKGRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVI
Sbjct: 43  AVINCADNTGGKNLYIIAV-KGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVI 101

Query: 339 RQRKPFRRRDGVFIYFEDNAGVIVNNK 419
           RQRK +RR++GVF+YFE N  V V  +
Sbjct: 102 RQRKAYRRKNGVFLYFEANIKVRVRKQ 128



 Score = 36.7 bits (81), Expect = 0.026
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +2

Query: 116 AGAXFRISLGLPVGSSNQLRRQHRGQRNLYVIAVQG 223
           +G  FRI+LGLPVG+       + G +NLY+IAV+G
Sbjct: 29  SGGKFRIALGLPVGAVINC-ADNTGGKNLYIIAVKG 63


>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
          Length = 379

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 105 WWFPRXRNSVSPW---VSQWEAVINCADNTGG 191
           +WF R R S SP    VSQW +  +C+ + GG
Sbjct: 23  FWFRRRRRSCSPRNCDVSQWSSWGDCSSHCGG 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,920
Number of Sequences: 59808
Number of extensions: 347565
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)