Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F04
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   135   4e-32

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  135 bits (327), Expect = 4e-32
 Identities = 66/92 (71%), Positives = 75/92 (81%)
 Frame = +3

Query: 159 AVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 338
           AV+NCADNTG K + + S    I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVI
Sbjct: 24  AVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVI 82

Query: 339 RQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
           RQRK FRR+DG FIYFEDNAGVIVNNKG  +G
Sbjct: 83  RQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKG 114



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = +1

Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
           +GEMKGSAITGPVAKECADLWPRIA+
Sbjct: 109 KGEMKGSAITGPVAKECADLWPRIAA 134



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 116 AGAXFRISLGLPVGSSNQLRRQHRGQRNLYVIAVQG 223
           +GA FRISLGLPVG+       + G +NL+VI+V G
Sbjct: 10  SGAKFRISLGLPVGAVMNC-ADNTGAKNLFVISVYG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,265
Number of Sequences: 27780
Number of extensions: 254067
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)