Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_F04
(917 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 139 2e-33
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 139 2e-33
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 139 2e-33
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 46 3e-05
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 46 3e-05
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 43 3e-04
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 4.3
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 7.5
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 139 bits (337), Expect = 2e-33
Identities = 65/92 (70%), Positives = 79/92 (85%)
Frame = +3
Query: 159 AVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 338
A +NCADNTG K + + S K IKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++
Sbjct: 24 ATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIV 82
Query: 339 RQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 83 RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
+GEMKGSAITGP+ KECADLWPRIAS
Sbjct: 109 KGEMKGSAITGPIGKECADLWPRIAS 134
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 116 AGAXFRISLGLPVGSSNQLRRQHRGQRNLYVIAVQG 223
+G FR+SLGLPV ++ + G +NLY+I+V+G
Sbjct: 10 SGNKFRMSLGLPVAATVNC-ADNTGAKNLYIISVKG 44
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 139 bits (337), Expect = 2e-33
Identities = 65/92 (70%), Positives = 79/92 (85%)
Frame = +3
Query: 159 AVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 338
A +NCADNTG K + + S K IKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++
Sbjct: 24 ATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIV 82
Query: 339 RQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 83 RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
+GEMKGSAITGP+ KECADLWPRIAS
Sbjct: 109 KGEMKGSAITGPIGKECADLWPRIAS 134
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 116 AGAXFRISLGLPVGSSNQLRRQHRGQRNLYVIAVQG 223
+G FR+SLGLPV ++ + G +NLY+I+V+G
Sbjct: 10 SGNKFRMSLGLPVAATVNC-ADNTGAKNLYIISVKG 44
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 139 bits (337), Expect = 2e-33
Identities = 65/92 (70%), Positives = 79/92 (85%)
Frame = +3
Query: 159 AVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 338
A +NCADNTG K + + S K IKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++
Sbjct: 24 ATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIV 82
Query: 339 RQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 434
RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 83 RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 418 RGEMKGSAITGPVAKECADLWPRIAS 495
+GEMKGSAITGP+ KECADLWPRIAS
Sbjct: 109 KGEMKGSAITGPIGKECADLWPRIAS 134
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 116 AGAXFRISLGLPVGSSNQLRRQHRGQRNLYVIAVQG 223
+G FR+SLGLPV ++ + G +NLY+I+V+G
Sbjct: 10 SGNKFRMSLGLPVAATVNC-ADNTGAKNLYIISVKG 44
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 46.4 bits (105), Expect = 3e-05
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 150 QWEAVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 320
Q V+ DN+G K++ K KG A GD IVA+VK+ P + K V
Sbjct: 48 QMGTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAMPNGKVKKGAV 100
Query: 321 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRN 428
+ VV+R R DG + F+DNA V+V++K +N
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKN 136
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 46.4 bits (105), Expect = 3e-05
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 150 QWEAVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 320
Q V+ DN+G K++ K KG A GD IVA+VK+ P + K V
Sbjct: 49 QMGTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAMPNGKVKKGAV 101
Query: 321 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRN 428
+ VV+R R DG + F+DNA V+V++K +N
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKN 137
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 42.7 bits (96), Expect = 3e-04
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Frame = +3
Query: 150 QWEAVINCADNTGGKEICM*SQSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 320
Q ++ C DN+ KE+ + KG A GD+IV +VK+ P ++KKV
Sbjct: 50 QMGTILKCVDNSCAKEVMCIQSLRGKKG-------ARLGDIIVGSVKEANPIVQKKVKKD 102
Query: 321 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIV---NNKGRNEGLGHHR 449
+P VV+R P R DG + F+DNA V+V KG+N G R
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKR 160
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 326 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 237
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 398 RIVLKVYKYSITPSERFPLPDDHCRHYL 315
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,396,994
Number of Sequences: 28952
Number of extensions: 242951
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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