Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F03
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    29   1.2  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    28   2.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.0  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   4.7  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   4.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.2  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 548 QLTSFSMLVYTIAVGNSLIGGIGCGTEL 465
           QL+SF  L+YT+  G S++G  GC T++
Sbjct: 420 QLSSF--LLYTVYAGGSIVGLSGCFTDI 445


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 130 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGQG 276
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QG+G
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKG 141


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 178 NQDLEEKLYNSILTGDYDSAVRQSLEYESQGQGL 279
           + DLE+ +  ++LTGD  SAV+  LE +   + L
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLEEKKISEAL 584


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 255 FQALTDSTVVVAGEDAVVQFLLEVLV 178
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 197 FSSRSWLEVSADSSTTPALAASMHIANTXEKFHFVKEP-FKIRLSSLANQ 51
           FS R W ++  DS T      S+  +      HF+ EP +K+   +++++
Sbjct: 350 FSKRLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDE 399


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 795 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 884
           TPRETA+ L  ++ +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 143 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 253
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,975
Number of Sequences: 5004
Number of extensions: 57911
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)