Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F03
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0819 + 7949938-7950678                                           29   3.7  
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441...    29   4.9  

>08_01_0819 + 7949938-7950678
          Length = 246

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 367 PLPTH--SL*QYSHGVPSLVNDQVVNYILDDGALALGSHIPSSDGQHCRSRR*GCCCTVS 194
           PLP+H  S+    H +PSL +   V    D G  A       S  + CR+ R    C+V+
Sbjct: 2   PLPSHFPSISFLLHLIPSLFSSSCVASDNDGGGRARDDDTVLSHQRPCRAGRMPAACSVT 61

Query: 193 P 191
           P
Sbjct: 62  P 62


>06_02_0061 -
           11043183-11043417,11043556-11043796,11043923-11044106,
           11044228-11044437,11045135-11045423,11045787-11045923,
           11046019-11046137,11046405-11046518,11046710-11046803
          Length = 540

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 554 NFQLTSFSMLVYTIAVGNSLIGGIGCG 474
           +F  T + +L Y +A+  SL+GGIG G
Sbjct: 58  HFIWTYYCVLKYVLAISGSLLGGIGYG 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,148
Number of Sequences: 37544
Number of extensions: 425075
Number of successful extensions: 1277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)