Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F03
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)                31   1.6  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   30   2.9  

>SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 197 NCTTASSPATTTVLSVRAWNMRAKGKGSIIQNVVNNLIIDKRRNTMGVLLQAVGRQRTGN 376
           +C      AT  + ++RA          +IQ  + N I  +RR T  + L A  + R G 
Sbjct: 100 HCDAIVKKATKRLYAIRALKKSGLSSNDLIQ--IGNTI--QRRETACIALVAKAK-RGGP 154

Query: 377 C*KVLPIKL*THHG 418
             +++PI + THHG
Sbjct: 155 LKRLIPIPVATHHG 168


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 134  SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKGKG 277
            +PP+R S    R+     SR    T S+P T +  S RA + R K KG
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAKG 1405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,385,622
Number of Sequences: 59808
Number of extensions: 466404
Number of successful extensions: 1204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)