Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_F02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    29   1.1  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    27   4.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   6.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   6.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   8.0  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 62  YAAKRCTSRSGRGVFYHLC 118
           YA+  CT R+GR V +H+C
Sbjct: 417 YASLPCTDRAGRTVVHHIC 435


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 504 QAPWLPPPIFPSFKVADEAVKELHAEED 587
           +AP LP P+ P+ K+    V   H E+D
Sbjct: 234 KAPELPKPLIPAMKLMSTIVCVKHVEKD 261


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 543 KVADEAVKELHAEED*DVVDPRPTKGVHKEMRVKKEALYH 662
           +V D A +  H+E +    DP   KGVH  MR    AL H
Sbjct: 385 EVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTH 424


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 700 STAKIATEKTALRWYNASFLTLISLCTPLVG 608
           S +K+  E    RWY+ S+   +++C  ++G
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIG 828


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 742  NXPLFIGPGPPPTASTAKIATEKTALRWYNA-SFLTLISLCTPLV 611
            N  LF+  G     +  + A+ + AL++ +  SFL ++S C PL+
Sbjct: 970  NPVLFLTEGGTAYRTDVRAASLRQALKFASQWSFLGIVSACEPLI 1014


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 510 PWLPPPIFPSFKVADEAVKELHAEED 587
           P LPPP  P       AV + H +ED
Sbjct: 66  PSLPPPPSPGILATSPAVLQKHQQED 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,555
Number of Sequences: 5004
Number of extensions: 39913
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)