Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_F02
(866 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 65 5e-11
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 63 3e-10
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 62 4e-10
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 56 3e-08
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 30 1.7
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 30 1.7
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 30 1.7
At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) fami... 29 5.3
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 28 9.3
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 28 9.3
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 28 9.3
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 247 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 426
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 427 GEKG-FEAAGVTGPGGEPVK 483
G G +A VT PGG +K
Sbjct: 64 GSDGKTKAVNVTAPGGGSLK 83
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 250 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 429
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68
Query: 430 EKGF-EAAGVTGPGGEPVKGS 489
G +A V+GP G PV+G+
Sbjct: 69 NSGRPKAIEVSGPDGAPVQGN 89
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 62.5 bits (145), Expect = 4e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 250 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VA 426
E+ G+VKWF+ + G+GFI +D +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEID 64
Query: 427 GEKGFEAAGVTGPGGEPVKGS 489
+A V+GP G PV+G+
Sbjct: 65 NNNRPKAIDVSGPDGAPVQGN 85
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 247 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 426
A + G V WF+ GYGFI +D E++FVHQ++I + RS+ GE+VE+ +
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63
Query: 427 GEKG-FEAAGVTGPGG 471
G G +A VT PGG
Sbjct: 64 GSDGKTKAIEVTAPGG 79
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 385 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 537
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 385 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 537
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 385 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 537
S G+ + + GE G G+TG G EPVK KRRG R+Y P
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108
>At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) family
protein similar to RALF precursor [Nicotiana tabacum]
GI:16566316
Length = 129
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 77 CTSRSGRGVFYHLCHHRRSPITPW 148
C RSGR + H C R P+ P+
Sbjct: 94 CPPRSGRSYYTHNCFRARGPVHPY 117
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 135 GERRWWQRW*KTPRPLLDV 79
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 135 GERRWWQRW*KTPRPLLDV 79
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 694 AKIATEKTALRWYNASFLTLISLCTPLV 611
AK TE+ AL W +F +++LC ++
Sbjct: 158 AKTLTEREALEWSKRNFADVVTLCPSVI 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,721
Number of Sequences: 28952
Number of extensions: 242880
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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