Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E22
         (958 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   0.87 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   1.2  

>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 227 VSGTFPILGKCPSESESAHHNAAXLLXPPTHVRRVTGXP 111
           V+ TF  L   P+E+     N      P T +R + G P
Sbjct: 249 VTSTFDFLSLHPAETSMNDANRNDCAKPLTQIRNIPGPP 287


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 227 VSGTFPILGKCPSESESAHHNAAXLLXPPTHVRRVTGXP 111
           V+ TF  L   P+E+     N      P T +R + G P
Sbjct: 249 VTSTFDFLSLHPAETSMNDVNRNDCAKPLTQIRNIPGPP 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,229
Number of Sequences: 336
Number of extensions: 1334
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26996013
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)