Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E21
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami...    29   4.2  
At1g73090.1 68414.m08451 expressed protein                             28   7.3  
At1g12500.1 68414.m01447 phosphate translocator-related low simi...    28   9.7  

>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 789

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -2

Query: 494 CGLPRRSRSYRAPKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSDFYKI 348
           CG+P  SRS   P+ASL +++ +K     +YLA   N  +  L +F K+
Sbjct: 555 CGIP--SRSVERPQASLAAKVVLKTSRDAAYLA-LLNVVNTKLDEFMKL 600


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 292 LGPGDC*EKLWHDGRQLQRI 351
           +GPG C  + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291


>At1g12500.1 68414.m01447 phosphate translocator-related low
           similarity to glucose-6-phosphate/phosphate-translocator
           precursor [Zea mays] GI:2997589,
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275,
           SP|P21727|CPTR_PEA Triose phosphate/phosphate
           translocator, chloroplast precursor (CTPT) {Pisum
           sativum}
          Length = 361

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/73 (30%), Positives = 28/73 (38%)
 Frame = +1

Query: 28  SXPSFHTFGRAPGTASASGXFCXRFVQPFSKFFKNAQAAEXFLFGSLPRQCACIRQTXML 207
           S PSFH FG     AS +G      VQ      ++ +     L   +    ACI     L
Sbjct: 198 SEPSFHLFGFLICVASTAGRALKSVVQGIILTSESEKLHSMNLLLYMAPMAACILLPFTL 257

Query: 208 LKKXNSLNTLAEK 246
             + N L  L EK
Sbjct: 258 YIEGNVLRVLIEK 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,965
Number of Sequences: 28952
Number of extensions: 221648
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)