Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E16
         (1089 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    33   0.36 

>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 214 GPKGKPNGVGE-RRNAXPGTFFQRGTIRKQPXNPKGSSQLKELLRNKQGFKPSGLQPKGS 390
           GPKG P G G+  R+  PG   Q G+   +P  P  + Q        Q   P G    G 
Sbjct: 194 GPKGAPGGPGQPGRDGQPGQAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNGQPGG 253

Query: 391 KGTP 402
            G P
Sbjct: 254 PGQP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,168
Number of Sequences: 27780
Number of extensions: 307892
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2929426640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)