Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E15
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    28   1.6  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.9  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   4.9  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   8.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   8.6  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 608 HNTKYNQYLKMSTXTCNCNSRXRVVYXGNSADSTREQWFFQPAKYEKRR 754
           +++ YN+   M T +C+C+S  +  Y GN A    E  F      E +R
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELKR 94


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 618 LVLWILKYTLLFSHQGNELPTDEVQYACL--HHRRRQFSHSRGLVVEP 481
           L  WI +  LL  +  NELP  E+    L      R+ S S G V++P
Sbjct: 520 LFFWIARMALLCKYFSNELPFKEIILHPLVRDSEGRKMSKSLGNVIDP 567


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 839  VGHXXXXRRVFLTSTRGSLHPF 904
            VGH    RR+ + S  G++HPF
Sbjct: 3340 VGHGVCYRRLSIRSNGGTIHPF 3361


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +2

Query: 644 TXTCNCNSRXRVVYXGNSADSTREQWFFQPAKYEKRRPXXSSTIANSTMPW 796
           T T N + + R  Y G      R  W F P +YE +    S  I  +   W
Sbjct: 478 TNTPNLDEKRREFY-GKRVIGVRMCWDFPPVEYEDKDEIWSPVINRTDKDW 527


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 176 RTLLTKNSRRNCTTASSPANYDSAVRQSLEYEK 274
           R L  +NS  N    +  +NYD A+    EY K
Sbjct: 370 RVLAVENSLGNLIQKAEESNYDQAIMDLFEYVK 402


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 278 LASHIPSSDGQHCRSSPVRMLLYSFSSSS 192
           LAS +P  + ++  S+  R+ L +FSSSS
Sbjct: 30  LASFLPKKENKNLLSNAARVKLLTFSSSS 58


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 524  RWCRQAY*TSSVGSSLPW 577
            RW +Q + TS++G  LPW
Sbjct: 2275 RWLQQFWATSNIGLYLPW 2292


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 524  RWCRQAY*TSSVGSSLPW 577
            RWC + + +S +G +LPW
Sbjct: 2221 RWCLEFWSSSGLGINLPW 2238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,434
Number of Sequences: 5004
Number of extensions: 62417
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)