Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E15
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                31   1.3  
SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046)               30   3.0  
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 29   6.9  
SB_38907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_13513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_11672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 418 SKV*WEVLSNNFLSVADPQLVAVLPWCSVSLSMIRLLTTFWMMEPLP 278
           SK+ W ++S  FL  A   L A LP  S S ++  +  + W+++  P
Sbjct: 25  SKIRWSMMSKPFLKSAKNNLTAQLPRSSASNAICNMYISAWVVDLPP 71


>SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046)
          Length = 338

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 365 TACSSTPMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWL 186
           +ACS+  ++    ++ +V  Y+ +   +     I + D  HC  +P+ M   +  S    
Sbjct: 257 SACSAGGLIISGLISWRVRKYMQNKKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTY 316

Query: 185 EVSADSST 162
           E    SST
Sbjct: 317 EEVGQSST 324


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -1

Query: 347 PMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWLEVSADS 168
           P+V   F+  QV N  L DG+ A A++  +   Q  + S V+  +Y   S + L  + D 
Sbjct: 213 PLVENHFLIVQVTNVPLVDGSSATATNKITVIIQENKDSCVQQKIYKAKSGA-LPAAFDD 271

Query: 167 STNARAGGEQCNMRQIQ 117
            T+   G  +C++R ++
Sbjct: 272 GTST-TGTSECSVRILE 287


>SB_38907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 365 TACSSTPMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWL 186
           +ACS+  ++    ++ +V  Y+ +   +     I + D  HC  +P+ M   +  S    
Sbjct: 19  SACSAGGLIIIGLISWRVRKYMKNRKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTY 78

Query: 185 EVSADSST 162
           E    SST
Sbjct: 79  EEVGQSST 86


>SB_13513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 365 TACSSTPMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWL 186
           +ACS+  ++    ++ +V  Y+ +   +     I + D  HC  +P+ M   +  S    
Sbjct: 19  SACSAGGLIIIGLISWRVRKYMENRKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTY 78

Query: 185 EVSADSST 162
           E    SST
Sbjct: 79  EEVGQSST 86


>SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 365 TACSSTPMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWL 186
           +ACS+  ++    ++ +V  Y+ +   +     I + D  HC  +P+ M   +  S    
Sbjct: 19  SACSAGGLIIIGLISWRVRKYMENRKRIHSTEGIKADDADHCYENPIEMTPRAADSDHTY 78

Query: 185 EVSADSST 162
           E    SST
Sbjct: 79  EEVGQSST 86


>SB_11672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 365 TACSSTPMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFSSSSWL 186
           +ACS+  ++    ++ +V  Y+ +   +     I + D  HC  +P+ M   +  S    
Sbjct: 19  SACSAGGLIIIGLISWRVRKYMENRKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTY 78

Query: 185 EVSADSST 162
           E    SST
Sbjct: 79  EEVGQSST 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,042,420
Number of Sequences: 59808
Number of extensions: 477933
Number of successful extensions: 1097
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)