Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E14
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           33   0.19 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   30   2.3  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   3.1  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   5.4  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               28   7.2  

>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -3

Query: 527 PPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
           PP   F    PPPP    F PPP      PPGGG
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPP----PPPPGGG 673


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -3

Query: 551  PXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPP 435
            P P GG  PP        PPPP      PPP      PP
Sbjct: 956  PPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
 Frame = -3

Query: 551  PXPXGGXXP----PXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
            P P GG  P    P        PPPP      PPP      PP GG
Sbjct: 923  PPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGG 968



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -2

Query: 555  LPPXXXGGXTPXXXXFFFXPPPPXXXXFXPPPXXXXXXPPXXGXGXXXKXP 403
            LPP   GG  P        PPPP      PPP      PP  G       P
Sbjct: 932  LPPPPPGGSAPSQ------PPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPP 976


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 527 PPXXXFFFXXPPPPXXXFFXPPPXXXXXXPP 435
           PP   F    PPPP   F  PPP      PP
Sbjct: 201 PPPPGFPGGAPPPPPPPFGAPPPPALNGGPP 231


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = -3

Query: 539 GGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGGXXXXKXXPXFFGG 387
           GG  PP        P PP    + PPP      PP GG         + GG
Sbjct: 214 GGGIPPQNHPLTNYPAPPPQG-YAPPPGGYPGAPPAGGYPGAPPPGGYPGG 263


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -2

Query: 552 PPXXXGGXTPXXXXFFFXPPPPXXXXFXPPPXXXXXXPPXXG 427
           PP    G  P        PPPP      PPP      PP  G
Sbjct: 377 PPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPSEG 418



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -3

Query: 551 PXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGGXXXXK 411
           P P  G  PP        PPPP      PPP      PP  G    K
Sbjct: 378 PPPTNGPPPPPPPTNGPPPPPPPTNG-PPPPPPPTNGPPSEGKCGRK 423


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = -3

Query: 551 PXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGGXXXXKXXPXFFGG 387
           P   G   PP         PPP      PPP      PP GG       P   GG
Sbjct: 319 PARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGG 373


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = -3

Query: 551 PXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGG 429
           P P  G  PP   F    PPPP   F  PPP      PP G
Sbjct: 469 PPPPMGMYPPPRGF----PPPP---FGPPPPFYRGPPPPRG 502


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 527 PPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
           PP        PPPP      PPP      PPG G
Sbjct: 295 PPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDG 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,408
Number of Sequences: 59808
Number of extensions: 175230
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)