Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E14
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.90 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.6  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   8.4  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = -3

Query: 563 FXXXPXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPP 435
           F   P   GG  PP   F    PPPP      PPP      PP
Sbjct: 73  FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 566 FFXXXPXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPP 435
           FF   P P G   PP        PPP       PPP      PP
Sbjct: 63  FFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 566 FFXXXPXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPP 435
           F    P P G   PP        PPPP      PPP      PP
Sbjct: 73  FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPP 116



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 489 PXXXXFXPPPXXXXXXPPXXGXGXXXKXPXLFWGG 385
           P    F PPP      PP  G G     P +F GG
Sbjct: 59  PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGG 93



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/62 (29%), Positives = 18/62 (29%)
 Frame = -2

Query: 507 FFXPPPPXXXXFXPPPXXXXXXPPXXGXGXXXKXPXLFWGGEXGXXFFFLTXPLXXXPGG 328
           FF PPP       PPP      PP          P    GG       F   P    P G
Sbjct: 63  FFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSG 122

Query: 327 GG 322
            G
Sbjct: 123 LG 124



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 556 PXPXXXGGXHPPXXXFFFXPPPPXXFXFFXPP 461
           P P   GG  PP       PPPP  F    PP
Sbjct: 86  PPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPP 117



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = -1

Query: 607 PXXNFFFXXXXXXFFFXPXPXXXGGXHPPXXXFFFXPPPPXXFXFFXPP 461
           P  +FF        F  P P   G   PP       PPPP       PP
Sbjct: 59  PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 552 PPXXXGGXTPXXXXFFFXPPPPXXXXFXPPPXXXXXXPPXXG 427
           PP    G TP        PPPP    F PP       PP  G
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 552 PPXXXGGXTPXXXXFFFXPPPPXXXXFXPPPXXXXXXPPXXG 427
           PP    G TP        PPPP    F PP       PP  G
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 20/60 (33%)
 Frame = -3

Query: 563 FXXXPXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGGXXXXKXXPXFFGGG 384
           F   P P  G  PP    F     PP    F PPP      PP G        P  F GG
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPP---FMPPPPHFGMGPPRG--FMPPPHPMMFRGG 347


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 20/60 (33%)
 Frame = -3

Query: 563 FXXXPXPXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGGXXXXKXXPXFFGGG 384
           F   P P  G  PP    F     PP    F PPP      PP G        P  F GG
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPP---FMPPPPHFGMGPPRG--FMPPPHPMMFRGG 347


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -3

Query: 545 PXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
           P  G   P        PPPP      PPP      PP GG
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -3

Query: 545 PXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
           P  G   P        PPPP      PPP      PP GG
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -3

Query: 545 PXGGXXPPXXXFFFXXPPPPXXXFFXPPPXXXXXXPPGGG 426
           P  G   P        PPPP      PPP      PP GG
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = -1

Query: 610  PPXXNFFFXXXXXXFFFXPXPXXXGGXHPPXXXFFFXPPPPXXFXFFXPP 461
            PP  + FF       F+ P P       PP     F PP    F +  PP
Sbjct: 1046 PPQQSPFFNNAPGNGFYPPQPRDFSPPQPPQQSRMF-PPSQPPFGYAGPP 1094


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,765
Number of Sequences: 27780
Number of extensions: 181948
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)