Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E12
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    34   0.024
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.90 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   1.6  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   8.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   8.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   8.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 335 CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFK 460
           CY     +Y E   +K     NDD   +  FD AK  LK FK
Sbjct: 522 CYALASDQYPELPVIKAYQGCNDDWNIMDHFDFAKPELKMFK 563


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 446 ILTLLYQTLTMFENHH*LHLVFSLFDFPSIYFPSFDNNIANHLLTYSSKYF 294
           I T ++    +FE HH L  + ++FD+     P     + N +L+ S K F
Sbjct: 286 IYTTVWLLQRLFEAHHSLDPLLTIFDYYLSVSPKDITRLTNAILSLSMKQF 336


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 350 ESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTD 529
           +S  SES  +  L+V  +  +T+S F +A+      K WKTSNG +    D+   E F  
Sbjct: 63  DSGVSESWVLDFLSVTGE--KTISEF-LAQ------KIWKTSNGDLNVAVDMYFDESFNI 113

Query: 530 KTAKKLCDS--ILNGPTEEVEQISNKI 604
           K +    +S    +    +++Q+SN +
Sbjct: 114 KNSNPDSESQKDTDASLTQMDQLSNTV 140


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 177 YLN-VLMILPRVAVSKYVQPITTFLIHFGVRYNLLITFS 290
           YL+ +LMI+P + +   V   T  +IH  + YN+ + F+
Sbjct: 60  YLSFLLMIVPLLMLGDQVNDFTFSIIHTSIWYNVFVVFT 98


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 374 KVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTS 475
           K  + ++INDDS+ +++  ++K  + + K+ +TS
Sbjct: 196 KGTVTSIINDDSRNINKKTLSKQPVSEHKEKQTS 229


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 183  NVLMILPRVAVSKYVQPITTFLI 251
            N++   PR++V  +VQPIT  L+
Sbjct: 1214 NMVQSFPRLSVEAHVQPITRSLV 1236


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 557 ILNGPTEEVEQISNKIKGQYYI 622
           +L GP  E++  SNKI  +YY+
Sbjct: 699 LLLGPLNELKNESNKINEEYYL 720


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 682 VNSVCWTLINKMIMKLWSGSIIVL 753
           V+S+C+T  N + + LWS  II+L
Sbjct: 527 VSSLCFTEENVVYVGLWSADIIML 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,238
Number of Sequences: 5004
Number of extensions: 70595
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)