Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E12
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical pr... 29 3.4
U41554-9|AAP82650.1| 328|Caenorhabditis elegans Multidrug resis... 29 4.5
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 29 4.5
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 29 4.5
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 29 4.5
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 29 4.5
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 29 6.0
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 29 6.0
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 29 6.0
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 29 6.0
>U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical
protein ZK813.5 protein.
Length = 471
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/56 (21%), Positives = 31/56 (55%)
Frame = -1
Query: 716 ILFISVQQTELTDIYTVNTVLQSLIVLSFKFGCNIDLLFYLIFVQLLQWVHLIYCH 549
+ +++++T+ + T N +L + +++S F + ++ LI ++L+YCH
Sbjct: 14 LAIVTIKETQSASLRTTNAILIAALLVSSYFLNVLFIVAVLITKSFRTTIYLMYCH 69
>U41554-9|AAP82650.1| 328|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform d protein.
Length = 328
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 262 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKLLSNPD 315
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform e protein.
Length = 1534
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1468 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKLLSNPD 1521
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform c protein.
Length = 1534
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1468 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKLLSNPD 1521
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform b protein.
Length = 1534
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1468 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKLLSNPD 1521
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform a protein.
Length = 1528
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1462 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKLLSNPD 1515
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resistance
related protein1 protein.
Length = 1540
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1474 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKVLSNPD 1527
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -1
Query: 659 VLQSLIVLSFKFGCNIDLLFYLIFVQL 579
V +S+I++ FKFG + ++F++ FV++
Sbjct: 38 VNRSMILIYFKFGLDAIIMFFMFFVEI 64
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -1
Query: 659 VLQSLIVLSFKFGCNIDLLFYLIFVQL 579
V +S+I++ FKFG + ++F++ FV++
Sbjct: 38 VNRSMILIYFKFGLDAIIMFFMFFVEI 64
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 610 SILHPNLKESTIKDCKTVLTVYISVNSVCWTLINKMIMKLWSGSIIVLITPKERRSDPD 786
S+L ++E KDC TVLT+ +N+V + + ++ L G + TPK+ S+PD
Sbjct: 1468 SLLQKTIREQ-FKDC-TVLTIAHRLNTV---MDSDRLLVLDKGCVAEFDTPKKVLSNPD 1521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,585,468
Number of Sequences: 27780
Number of extensions: 377241
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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