Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E12
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    33   0.34 
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    31   1.0  
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor...    28   7.3  

>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 344 NLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGF 523
           NL+  YS+  + K+L V++D S+   + D  +  L   K+ K  +  V   SD+ L  G 
Sbjct: 296 NLKDPYSQLHERKVLVVLDDVSKR-EQIDALREILDWIKEGKEGSRVVIATSDMSLTNGL 354

Query: 524 TDKT 535
            D T
Sbjct: 355 VDDT 358


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 385 YFHFLTFRVFTFQVLITTSRTTY*PTVQNILLLKVINKL 269
           Y  FL   VFT  V +T     Y P ++++L+ KVIN L
Sbjct: 297 YKSFLWSLVFTVPVFLTAMVFMYIPGIKDLLMFKVINML 335


>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
            chloroplast, putative / Mg-protoporphyrin IX chelatase,
            putative (CHLH) nearly identical to magnesium chelatase
            subunit GI:1154627 from [Arabidopsis thaliana]; contains
            Pfam profile: PF02514 CobN/magnesium chelatase family
            protein
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +2

Query: 314  SISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKK---FKQWKTSNGQ 484
            ++S +   +QNL+S  SE     + +  + D   L +  + K + K         T+N Q
Sbjct: 1200 ALSTAEVTFQNLDS--SEISLTDVSHYFDSDPTNLVQ-SLRKDKKKPSSYIADTTTANAQ 1256

Query: 485  VKTLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISNKI 604
            V+TLS+   ++  T     K  + +++   E V +I  ++
Sbjct: 1257 VRTLSETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRL 1296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,871
Number of Sequences: 28952
Number of extensions: 323054
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)