Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E11
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    54   3e-08
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   4.6  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    27   4.6  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   6.0  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = +1

Query: 640 QVQYXLVFCLWVLTFNPPIG*KMNK-FNVIPILADILSDSVKEKVPRIVLXVFXNLIEK- 813
           Q+QY  +FC W LTF   I   +NK F++I +L  I+    K KV R+VL +  NLI+K 
Sbjct: 221 QLQYYSLFCFWQLTFESHIAQDINKRFDLIKLLVQIIRSDTKTKVYRLVLAILVNLIDKA 280

Query: 814 PED 822
           P+D
Sbjct: 281 PKD 283



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 68  SEIRQTQINWQSYLQSQMITQRDHDFIVNLDQR---GQKDLPDKNPDACAEVFLNLLTHI 238
           + +R   I WQ Y +S  + + +   I NL  +         +++  A + +FL LL+  
Sbjct: 29  NNVRCVAIPWQGYQRSGSLEENELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMK 88

Query: 239 SKDHTIQYILV-LIDDILSEDK 301
                + + LV L D +L+ +K
Sbjct: 89  DTPDVVNFALVKLADTLLNSNK 110


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 649 IEPGSSLWRPRIDSKVDIPSTERKAKRYSSIRSIICRHRATDWI 518
           + P S+L       K    ST  + +RYS+   ++  H A++W+
Sbjct: 561 VNPWSTLELSLSMKKALTLSTNERNQRYSNCLDVVLTHSASNWV 604


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 322 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGIL 188
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 287 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 451
           L  DK+++K+F E K   ++  P  N++   D F       +I +L C H  LM+
Sbjct: 76  LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,363
Number of Sequences: 5004
Number of extensions: 67972
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)