Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E11
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 62 4e-10
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 42 5e-04
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 33 0.30
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.2
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 29 3.6
02_05_0871 + 32367614-32368048,32368153-32368226,32368275-32368326 29 3.6
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 4.8
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 28 8.4
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 62.5 bits (145), Expect = 4e-10
Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Frame = +2
Query: 71 EIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQKD---LPDKNPDACAEVFLNLLTHIS 241
++ + I W+SY+ +++I+ + D + + L D++ + VFLN+L +IS
Sbjct: 53 QVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNIS 112
Query: 242 KDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLN 364
K+ T++Y+L LID++L+ + R +F + SG +++ PFL+
Sbjct: 113 KEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLS 154
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 42.3 bits (95), Expect = 5e-04
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +1
Query: 622 ASRVNFQVQYXLVFCLWVLTFNPPIG*KMNKFNVIPILADILSDSVKEKVPRIVLXVFXN 801
+++ + Q+ Y C+W+L+F ++ V+P L +++ S KEKV R+V+ N
Sbjct: 83 STQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRN 142
Query: 802 LIEK 813
L+ K
Sbjct: 143 LLAK 146
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 191 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 361
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 362 NLLNRQDEFVQHMTARIIAKLACWHPQLMD 451
N L +E+++ +T R + +L P+L++
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRLN--EPELLE 131
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 191 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 364
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 365 LLNRQDEFVQHMTARIIAKLACWHPQLMD 451
L+ +E+++ +T R + +L+ P++++
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS--EPEVLE 130
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 95 WQSYLQSQMITQRDHDFIVNLDQRGQKDLPDKNPDACAEVFLNLLTHI 238
W + S ++ Q + F++N + Q+D D NP +L++L H+
Sbjct: 471 WLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>02_05_0871 + 32367614-32368048,32368153-32368226,32368275-32368326
Length = 186
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 724 IPILADILSDSVKEKVPRIVLXVFXNLIEK 813
IP+LA +L D +EK+PR+ + L++K
Sbjct: 133 IPVLAKVLPDGSEEKLPRLSPRLSVELVQK 162
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 328 RLTKYLHP-RFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGILVRQIFLAALV*V 152
R+T+ L P IF+++V NE ++ A ++ EK G L Q+F+ ++ +
Sbjct: 301 RITRGLEPVSQIFKQHVTNEGTALVKQAEDAASNKKPEKKEIVG---LQEQVFVRKIIEL 357
Query: 151 HDKIVIALSD 122
HDK V ++D
Sbjct: 358 HDKYVAYVTD 367
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 212 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 304
+F+NL+ + ++ ++++V IDDIL +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,310,419
Number of Sequences: 37544
Number of extensions: 452896
Number of successful extensions: 1179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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