Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E11
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 117 1e-26
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 80 2e-15
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF040645-13|AAB94983.1| 148|Caenorhabditis elegans Hypothetical... 30 1.9
Z77661-9|CAI46604.1| 345|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 3.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 3.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 3.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 3.3
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 28 7.5
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 28 7.5
AY305840-1|AAR11985.1| 238|Caenorhabditis elegans nuclear recep... 28 9.9
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 28 9.9
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 28 9.9
AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormo... 28 9.9
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 117 bits (281), Expect = 1e-26
Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Frame = +2
Query: 71 EIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK-----NPDA-CAEVFLNLLT 232
E+R + NW SY +SQMI + D++FI + + K+ D+ N + A+ NL+T
Sbjct: 27 ELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAANNANGQAAKTMANLIT 86
Query: 233 HISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFLNLLNRQDEFVQHMTA 406
++KD ++Y+L L DD+L EDKSRV++F + VW +L +L RQD F+ + +
Sbjct: 87 QVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYLGILQRQDNFIVNQMS 146
Query: 407 RIIAKLACWHPQLMDKSDLHFYLSWLKDQTQD 502
IIAKLAC+ M+ DL +Y S+LK+Q ++
Sbjct: 147 SIIAKLACFGTTRMEGQDLQYYFSFLKEQLKN 178
Score = 77.0 bits (181), Expect = 2e-14
Identities = 35/79 (44%), Positives = 50/79 (63%)
Frame = +1
Query: 628 RVNFQVQYXLVFCLWVLTFNPPIG*KMNKFNVIPILADILSDSVKEKVPRIVLXVFXNLI 807
+ NFQ+QY L+F +W LTFN I K +I L DILS+S KEKV RI+L F N++
Sbjct: 221 KTNFQLQYQLIFAVWCLTFNADIARKAPSLGLIQALGDILSESTKEKVIRIILASFVNIL 280
Query: 808 EKPEDQQXXQXPXIAMVQC 864
K ++++ + + MVQC
Sbjct: 281 SKVDEREVKREAALQMVQC 299
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 483 LKIKLKTNN-NDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSIL 620
LK +LK + NDY+ + ARCLQMMLR DEYR F+ DG+ TL++ L
Sbjct: 172 LKEQLKNSTTNDYMNTTARCLQMMLRHDEYRHEFVDSDGVQTLVTAL 218
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Frame = +2
Query: 71 EIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLNLLTHI 238
++R + NW + +++MI Q D+DFIV Q + + + F++L++ I
Sbjct: 20 KVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVHLMSQI 79
Query: 239 SKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQHMTARI 412
SKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H+T I
Sbjct: 80 SKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVHITFSI 139
Query: 413 IAKLACWHPQLMDKSDLHFYLSWLKD 490
+ K+A + + +L + + LK+
Sbjct: 140 LTKMAVFGNIKLSGDELDYCMGSLKE 165
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +1
Query: 628 RVNFQVQYXLVFCLWVLTFNPPIG*KMNKFNVIPILADILSDSVKEKVPRIVLXVFXNLI 807
+ FQ+QY ++FC+W+LTFN N+I ++ IL + KEKV RIV+ NLI
Sbjct: 214 KCGFQIQYQIIFCMWLLTFNGHAAEVALSGNLIQTISGILGNCQKEKVIRIVVSTLRNLI 273
Query: 808 EKPEDQQXXQXPXIAMVQ 861
+D + + M+Q
Sbjct: 274 TSNQDVYMKKQAALQMIQ 291
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 507 NNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSIL 620
NNDYI + RC+Q + R D YR +F++++G +L L
Sbjct: 172 NNDYIVTAVRCMQTLFRFDPYRVSFVNINGYDSLTHAL 209
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 343 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 236
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AF040645-13|AAB94983.1| 148|Caenorhabditis elegans Hypothetical
protein F52C6.13 protein.
Length = 148
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 447 WTKVICTFISPGLKIKLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILGL 626
+++++ F LK+ + +++I V+ CL + L I F FL G+ + L +
Sbjct: 52 FSEIVFFFPLSDLKVSFPEDVHNFINPVSPCLNLFLTISLTHFRFLDSHGVGQVCRKLDV 111
Query: 627 Q 629
Q
Sbjct: 112 Q 112
>Z77661-9|CAI46604.1| 345|Caenorhabditis elegans Hypothetical
protein F40G12.15 protein.
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 535 GVCR*CCVSMNTALL---SSLSMVYPP--YCRFWASRVNFQVQYXLVFCLWVLTFNPPI 696
G C C + T +L SL + +P Y F R + + +++ +W L +NPPI
Sbjct: 117 GKCFWYCSCLTTIILVTNRSLDLTFPSVGYVLFDEKRTFILLTFPILYGIWFLWYNPPI 175
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 410 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 240
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 239 *YASGG*ERLRHRHRDSCQADLFG 168
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 410 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 240
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 239 *YASGG*ERLRHRHRDSCQADLFG 168
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 410 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 240
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 239 *YASGG*ERLRHRHRDSCQADLFG 168
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -2
Query: 410 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 240
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 239 *YASGG*ERLRHRHRDSCQADLFG 168
G HR C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 142 FYRELRPARPKRSA*QESRCLCRSLSQPPDAYQQGP 249
+++++RP RP + +C C PP +Y+Q P
Sbjct: 279 YHQDMRPVRPVQH--HRVQCCCFKFVWPPWSYEQAP 312
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 573 FAFLSVD-GISTLLSILGLQSELPGSISTCILSLGFDIQSPYWLKNEQVQCYSNLS 737
FA +++D G+ LS+ ++ + P S+ T I+S+GF I+ + + V SNLS
Sbjct: 822 FAMVTIDIGVIGFLSLWSVKLD-PISMITIIMSIGFSIEFSAHITHGFVSNDSNLS 876
>AY305840-1|AAR11985.1| 238|Caenorhabditis elegans nuclear receptor
NHR-128 protein.
Length = 238
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 347 WQPFLNLLNRQDEFVQHMTARIIAK--LACWHPQLMDKSDLHFYLSWLKDQTQDQ 505
W P+ +L + E + I +K L C + MD ++ LSWL D + DQ
Sbjct: 59 WIPW-TILEKLYETSDYQRKNIFSKTVLMCGNDTCMDMNNYELDLSWLTDYSLDQ 112
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 711 VHFSANRGIECQNPETKYKXILNLEVHSGGPESTVRWIYHRQRGKQSGIHRYAAS 547
+H A R I C+NP+ ++ P S W Y G+ S +H++A S
Sbjct: 437 LHAIAAR-ITCENPDDSFRPSTGKVYEINFPSSQDAWAYF-SVGRGSSVHQFADS 489
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 711 VHFSANRGIECQNPETKYKXILNLEVHSGGPESTVRWIYHRQRGKQSGIHRYAAS 547
+H A R I C+NP+ ++ P S W Y G+ S +H++A S
Sbjct: 437 LHAIAAR-ITCENPDDSFRPSTGKVYEINFPSSQDAWAYF-SVGRGSSVHQFADS 489
>AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 128, isoform b protein.
Length = 451
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 347 WQPFLNLLNRQDEFVQHMTARIIAK--LACWHPQLMDKSDLHFYLSWLKDQTQDQ 505
W P+ +L + E + I +K L C + MD ++ LSWL D + DQ
Sbjct: 272 WIPW-TILEKLYETSDYQRKNIFSKTVLMCGNDTCMDMNNYELDLSWLTDYSLDQ 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,088,808
Number of Sequences: 27780
Number of extensions: 395217
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -