Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E11
(867 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 66 4e-11
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 37 0.015
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 37 0.015
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 33 0.33
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 30 1.7
At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR... 29 5.3
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 29 5.3
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR... 29 5.3
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 28 7.0
At5g02100.1 68418.m00131 oxysterol-binding family protein simila... 28 7.0
At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR... 28 7.0
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 28 7.0
At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase famil... 28 9.3
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/128 (23%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Frame = +2
Query: 71 EIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQK---DLPDKNPDACAEVFLNLLTHIS 241
++ + I W++Y+ +++++ + + D++ + L D++ A +F+++L I
Sbjct: 10 QVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIF 69
Query: 242 KDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLNLLNRQDEFVQHMTARIIA 418
K+ T++Y+L LI ++LS + +R ++F + + + ++PFL LL + + F+Q + +I+A
Sbjct: 70 KEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILA 129
Query: 419 KLACWHPQ 442
+ P+
Sbjct: 130 WIISARPK 137
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +1
Query: 622 ASRVNFQVQYXLVFCLWVLTFNPPIG*KMNKFNVIPILADILSDSVKEKVPRIVLXVFXN 801
+++ + Q+ Y C+W+L++ P + + L +++ S KEKV R+V+ F N
Sbjct: 209 STQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTMQRLTEVVKHSTKEKVVRVVILTFRN 268
Query: 802 LIEK 813
L+ K
Sbjct: 269 LLPK 272
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 191 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 364
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 47 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 103
Query: 365 LLNRQDEFVQHMTARIIAKL 424
L +E+++ +T R + ++
Sbjct: 104 NLQHPNEYIRGVTLRFLCRM 123
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 191 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 364
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 70 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 126
Query: 365 LLNRQDEFVQHMTARIIAKL 424
L +E+++ +T R + ++
Sbjct: 127 NLQHPNEYIRGVTLRFLCRM 146
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 104 YLQSQMITQRDHDFIVNLDQRGQKDL-PDKNPDACAEVFLNLLTHISKDHTIQYILVLID 280
YL + DHD I+ + QKDL D CA LN + + + TI +L +
Sbjct: 106 YLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLVVCAA--LNAICRLINEETIPAVLPQVV 163
Query: 281 DILSEDKSRVK 313
++L+ K V+
Sbjct: 164 ELLNHQKEAVR 174
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 289 KNVINEHKNVLNGVVLADMRQEVEKDFGTGIGILVRQ 179
K + N HKN ++ VL + Q + +D G+ +G RQ
Sbjct: 2192 KTLANVHKNFVDSYVLVRILQRLARDLGSAVGSHPRQ 2228
>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1041
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 17 FHYREFLRFDMRPTDXGSEIRQTQINWQSYLQSQMITQRD 136
FH+R F+ + + GS++ +++W+ L S+++ Q+D
Sbjct: 237 FHHRAFITYK---STSGSDVSGMKLSWEKELLSEILGQKD 273
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 17 FHYREFLRFDMRPTDXGSEIRQTQINWQSYLQSQMITQRD 136
FH+R F+ + + GS++ +++W+ L S+++ Q+D
Sbjct: 230 FHHRAFITYK---STSGSDVSGMKLSWEKELLSEILGQKD 266
>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1147
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 17 FHYREFLRFDMRPTDXGSEIRQTQINWQSYLQSQMITQRD 136
FH+R F+ + + GS++ +++W+ L S+++ Q+D
Sbjct: 235 FHHRAFITYK---STSGSDVSGMKLSWEKELLSEILGQKD 271
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 29 EFLRFDMRPTDXGSEIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDKNPDACA 208
E RFD P E R+T Q LQ Q+ T R + V +DQ DL K CA
Sbjct: 298 ERARFDSNP----KEFRETYQEEQLKLQEQITTARSNLSAVQIDQ----DLKVKISKVCA 349
Query: 209 EV 214
E+
Sbjct: 350 EL 351
>At5g02100.1 68418.m00131 oxysterol-binding family protein similar
to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 453
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 347 WQPFLNLLNRQDEFVQHMTARIIAKLACWHPQL 445
W+PF +L E H IA+ C HP +
Sbjct: 142 WKPFNPILGETYEMTNHNGINFIAEQVCHHPPM 174
>At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1301
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 17 FHYREFLRFDMRPTDXGSEIRQTQINWQSYLQSQMITQRD 136
FH+R F+ + + GS++ ++ W+ L S+++ Q+D
Sbjct: 233 FHHRAFITYK---STSGSDVSGMKLRWEKELLSEILGQKD 269
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -2
Query: 476 RDKSANHFCPSAADASKLAWQ*CEQSCAGQIHPDGSANSGRAAKRCQRISSHE 318
R+ +H + + + C ++C+ Q S NSG A C + S+ E
Sbjct: 685 REIPGDHAGERGLSSKTIQYPKCSEACSSQEDKKASENSGHAVNICVQTSAEE 737
>At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 274
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 684 ECQNPETKYKXILN--LEVHSGGPESTVRWIYHRQRGKQSG 568
+C+ T K ++ ++V++ E V W++H + GK++G
Sbjct: 211 QCEALHTSIKEVIQHAVQVNADSKEFPVEWLFHFRWGKKAG 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,743
Number of Sequences: 28952
Number of extensions: 362637
Number of successful extensions: 1046
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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