Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E10
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 867 LREVRKTXSRELLDAAVAISCSKSRAT*HSFSLISRTISRS 745
           + E   T + ++ D+  + +CS S++   S S ISR  +RS
Sbjct: 1   MMEEISTENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRS 41


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 867 LREVRKTXSRELLDAAVAISCSKSRAT*HSFSLISRTISRS 745
           + E   T + ++ D+  + +CS S++   S S ISR  +RS
Sbjct: 1   MMEEISTENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRS 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,975
Number of Sequences: 438
Number of extensions: 6598
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)