Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E09
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   4.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.3  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   7.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   7.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   7.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   7.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 281 VMPDFSRAPLCSDAAVDSWLHYFELDAP 364
           V+P  +R PL S  ++ S L    L+AP
Sbjct: 10  VIPTMARTPLKSSFSISSILPETALEAP 37



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 240 PRPTTLSP**VFNVSRMDVIKLDLPVRFFATTL 142
           P+PT L P   FN+ R+     ++   FF   L
Sbjct: 237 PKPTPLVPQQGFNMERLLAPSTEVSAPFFRQPL 269


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 630 LLVLAGVGPSILWMI*SRPKVW 565
           L+VL    P++L  + SRP+ W
Sbjct: 115 LMVLLVCTPTVLVEVNSRPETW 136


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 630 LLVLAGVGPSILWMI*SRPKVW 565
           L+VL    P++L  + SRP+ W
Sbjct: 115 LMVLLVCTPTVLVEVNSRPETW 136


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 695 FSKHSTCFIYYNII*GAVSKVPCSSSRVSD 606
           F+  S C +++N   G  S+  CS     D
Sbjct: 102 FADESKCDVFWNCWNGEASRYQCSPGLAYD 131


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 695 FSKHSTCFIYYNII*GAVSKVPCSSSRVSD 606
           F+  S C +++N   G  S+  CS     D
Sbjct: 102 FADESKCDVFWNCWNGEASRYQCSPGLAYD 131


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 488 TPEDVHYEG 514
           TPE +HYEG
Sbjct: 47  TPESLHYEG 55


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/71 (19%), Positives = 31/71 (43%)
 Frame = +3

Query: 15  TXSTNRGNSFKNFSSNSCPTNEEQELRCSETNC*RKGNPER*LKWSRRTARASPTLSRPS 194
           T +T++  S    S++S  + E+     + +   +  NP +   W +R      T++   
Sbjct: 159 TSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHLGQSTVNANG 218

Query: 195 ERH*RLTTETK 227
           E   + T+ T+
Sbjct: 219 ETKRQRTSYTR 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,838
Number of Sequences: 336
Number of extensions: 1981
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)