Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E09
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    92   4e-19

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 48/142 (33%), Positives = 67/142 (47%)
 Frame = +2

Query: 125 KPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRA 304
           K   V+   A  R G+ N    IR+ L+ H+G K+V L G F+++ G+   HVMPDF   
Sbjct: 142 KSSTVVHFKASVRKGEKNLTNCIRDGLQEHFGKKIVSLAGQFIIQTGKARLHVMPDFPGC 201

Query: 305 PLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXXRVQXXXXXXXXXXXXXXXXXXXXD 484
           P  ++A VD WL+YFE+ AP                R++                    D
Sbjct: 202 PFENNAEVDKWLNYFEMSAPLICATVMHSYDPGHNLRLE----HTHCYSDHGDAGHYHYD 257

Query: 485 TTPEDVHYEGYFTVASSLIRVD 550
            TPE V YEG+F  AS + R+D
Sbjct: 258 VTPETVSYEGWFAPASKIYRID 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,035
Number of Sequences: 27780
Number of extensions: 186237
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)