Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E08
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    73   3e-13
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    31   0.93 
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738...    31   1.2  
11_03_0079 + 9669666-9669728,9670779-9672545                           29   6.6  
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    29   6.6  
05_05_0082 + 22252993-22255617                                         28   8.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 42/111 (37%), Positives = 55/111 (49%)
 Frame = +1

Query: 142 VSKAXXACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLIT 321
           +S +  AC  +ALIL D  + +T  +I+T++KAA + V  YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 322 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
           ++GSG                                   SDDDMGF LFD
Sbjct: 61  SVGSG-GGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 23/76 (30%), Positives = 31/76 (40%)
 Frame = -2

Query: 329  PMLVIRSRTLMPSKALANRPGQYGATATAAAFKMVEICAPVTATAASTRMRAEXTHANXA 150
            P LV+RS  +MP    A+   + GAT +      V +   VTA  +     AE  H    
Sbjct: 1141 PTLVLRSTAMMP----ASSAPRVGATGSGTRVNPVPLRVMVTACTSGVAGDAEGIHVGGK 1196

Query: 149  FDTILXFERASCRRPE 102
             +  L  E A  R  E
Sbjct: 1197 REMELWMETAEAREVE 1212


>01_07_0053 +
           40772966-40773080,40773484-40773578,40773730-40773843,
           40773984-40774088,40774179-40774250,40774293-40774346,
           40774507-40774619,40774705-40774839,40774941-40775009,
           40775140-40775227,40775327-40775398,40775476-40775576,
           40775836-40775953,40776054-40776113,40776206-40776316,
           40776499-40776573,40776821-40776854,40777453-40777805,
           40778154-40778222,40778526-40778762
          Length = 729

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
 Frame = +3

Query: 45  LSMWLSLLSALKRACSLLSLRPPATCTFKXQN---------GVKSXIXMCXLCSHPGGCC 197
           LS+W  ++S+     S +S  P AT   + ++            + +    L +  GGCC
Sbjct: 529 LSVWSEMMSSSSSLVSAISASPSATAKARLRHDDAATATGAAAAAAVAARQLKTEHGGCC 588

Query: 198 CCRN 209
           CCR+
Sbjct: 589 CCRS 592


>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 165 CXLCSHPGGCCCCRNWCAN-FHHLESGGC--SCSAILARSVR 281
           C L S P  C     W A+  H+   GGC  S SA +A ++R
Sbjct: 54  CLLFSAPQSCSLAHTWTASVMHNRLVGGCFSSLSAAVASAIR 95


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 235 KAAAVAVAPYWPGLFAKALEG 297
           +AAA AVAP WP   A A EG
Sbjct: 159 RAAATAVAPIWPSTDAIAAEG 179


>05_05_0082 + 22252993-22255617
          Length = 874

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 CANFHHLESGGCSC 254
           C+ FHH   G CSC
Sbjct: 857 CSRFHHFNGGACSC 870


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,454
Number of Sequences: 37544
Number of extensions: 223745
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)