Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E08
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    93   2e-19
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    89   3e-18
U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   5.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 51/112 (45%), Positives = 62/112 (55%)
 Frame = +1

Query: 139 MVSKAXXACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLI 318
           M S    ACV +ALIL D  VA+TG +I+T+LKAA V   PYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 319 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
           T++ SG                                   SDDDMGFGLFD
Sbjct: 61  TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 50/112 (44%), Positives = 61/112 (54%)
 Frame = +1

Query: 139 MVSKAXXACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLI 318
           M S    ACV +ALIL D  VA+TG +I+T+LKAA V   P WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 319 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
           T++ SG                                   SDDDMGFGLFD
Sbjct: 61  TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 266 QYGATATAAAFKMVEICAPVTATAASTRMRAEXTH 162
           +YGA A+A  FK+VE+  P T  A   R  A+  H
Sbjct: 23  RYGAAASAG-FKLVEVSIPYTEPAEKLREAADEYH 56


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 TFKXQNG-VKSXIXMCXLCSHPGGCCCCRNWC 215
           T    NG VK     C  C    GCCCCR  C
Sbjct: 62  TLGESNGRVKRQGGGCGCCGCGCGCCCCRPRC 93


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 442 SDDDMGFGLFD 474
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 442 SDDDMGFGLFD 474
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 442 SDDDMGFGLFD 474
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,257,811
Number of Sequences: 27780
Number of extensions: 169523
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)