Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E07
(1221 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 35 0.094
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 32 0.66
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 32 0.66
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 31 2.0
At1g61080.1 68414.m06877 proline-rich family protein 30 2.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 25 3.9
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 29 4.7
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 29 4.7
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 4.7
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 26 6.5
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 29 8.2
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 8.2
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 35.1 bits (77), Expect = 0.094
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = +1
Query: 496 GGPPPPPXFXKXKXXXGXXGGXPXPPPXGGGXXXXXPXGKXFXGGG 633
GGPPPPP GG P PPP GG P G G G
Sbjct: 677 GGPPPPPP---------PPGGGPPPPPGGGPPPPPPPPGALGRGAG 713
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 552 GGXPPPPPXXGGXXXXXPRG 611
GG PPPPP GG P G
Sbjct: 677 GGPPPPPPPPGGGPPPPPGG 696
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -2
Query: 701 PPPXXGXKKXKKXXXXPXXXKKXPPPXXFXPXGXXXXXPPPXGGGXGXPPXXP 543
PPP G + + P + P P G PPP G G PP P
Sbjct: 182 PPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRP 234
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 427 FKXVXPPQXGXXPFXPQKKXFXXGGPPPPPXFXKXKXXXGXXGGXPXPPPXGGGXXXXXP 606
F PPQ G P P G PPPP G P PP GG P
Sbjct: 195 FSGPPPPQYGQRPMIPPPGGMMRGPPPPP------HGMQGPPPPRPGMPPAPGGFAPPRP 248
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -2
Query: 701 PPPXXGXKKXKKXXXXPXXXKKXPPPXXFXPXGXXXXXPPPXGGGXGXPPXXP 543
PPP G + + P + P P G PPP G G PP P
Sbjct: 182 PPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRP 234
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 427 FKXVXPPQXGXXPFXPQKKXFXXGGPPPPPXFXKXKXXXGXXGGXPXPPPXGGGXXXXXP 606
F PPQ G P P G PPPP G P PP GG P
Sbjct: 195 FSGPPPPQYGQRPMIPPPGGMMRGPPPPP------HGMQGPPPPRPGMPPAPGGFAPPRP 248
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 30.7 bits (66), Expect = 2.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 496 GGPPPPPXFXKXKXXXGXXGGXPXPPPXGG 585
GGPPPPP GG PPP G
Sbjct: 249 GGPPPPPHIGGSAPPPPHMGGSAPPPPHMG 278
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = -2
Query: 701 PPPXXGXKKXKKXXXXPXXXKKXPPPXXFXPXGXXXXXPPP---XGGGXGXPPXXP 543
PPP G P + PPP P PPP G G PP P
Sbjct: 539 PPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPP 594
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 25.0 bits (52), Expect(2) = 3.9
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 502 PPPPPXFXKXKXXXGXXGGXPXPPP 576
PPPPP F P PPP
Sbjct: 508 PPPPPLFMSTTSFSPSQPPPPPPPP 532
Score = 23.0 bits (47), Expect(2) = 3.9
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = +1
Query: 442 PPQXGXXPFXPQKKXFXXGGPPPPP 516
PP P F PPPPP
Sbjct: 484 PPPPPPPPLFTSTTSFSPSQPPPPP 508
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 29.5 bits (63), Expect = 4.7
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -2
Query: 653 PXXXKKXPPPXXFXPXGXXXXXPP--PXGGGXGXPPXXPXXXFXX*KXGGGGGP 498
P + P F P G P P GG G P P + GGGGGP
Sbjct: 52 PGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPGGGGGP 105
Score = 28.7 bits (61), Expect = 8.2
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = -2
Query: 632 PPPXXFXPXGXXXXXPPPXGGGXGXPPXXPXXXFXX*KXGGGGGPPXXKXFFWGXKGXXP 453
P F P G P G G G P + GGGGGP + G +G P
Sbjct: 42 PGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGPGP--WSGPRGPRP 99
Query: 452 XCGG 441
GG
Sbjct: 100 GGGG 103
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.5 bits (63), Expect = 4.7
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 508 PPPXFXKXKXXXGXXGGXPXPPPXGGGXXXXXPXGKXFXGGG 633
P P K G GG PPP GG P GGG
Sbjct: 33 PHPPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGKGGG 74
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 29.5 bits (63), Expect = 4.7
Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Frame = -2
Query: 701 PPPXXGXKKXKKXXXXPXXXKKXPPPXXFXPXGXXXXXPPPXGG--GXGXPPXXP 543
PP G P PPP G PPP G G G PP P
Sbjct: 372 PPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPPPPP 426
Score = 28.7 bits (61), Expect = 8.2
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +1
Query: 442 PPQXGXXPFXPQKKXFXXGGPPPPPXFXKXKXXXGXXGGXPXPPPXGGGXXXXXPXG 612
PP P P K PPPPP G G P PPP P G
Sbjct: 389 PPSAAAPPPPPPPKKGPAAPPPPPP--------PGKKGAGPPPPPPMSKKGPPKPPG 437
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 1110 PPPPXXXXXXFFXXPXXXXGGGGGXXPPPPXXKKK 1214
PPPP P G G PPPP KK
Sbjct: 396 PPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKK 430
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 26.2 bits (55), Expect(2) = 6.5
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +1
Query: 499 GPPPPPXFXKXKXXXGXXGGXPXPPP 576
GPPPPP + P PPP
Sbjct: 600 GPPPPPPPPPLQSHRSALSSSPLPPP 625
Score = 21.0 bits (42), Expect(2) = 6.5
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 463 PFXPQKKXFXXGGPPPPP 516
P P K PPPPP
Sbjct: 558 PLPPLKPLRILSRPPPPP 575
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 28.7 bits (61), Expect = 8.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -2
Query: 701 PPPXXGXKKXKKXXXXPXXXKKXPPPXXFXPXGXXXXXPPPXGGGXGXPPXXP 543
PPP G + P + P P G PPP G G PP P
Sbjct: 173 PPPPYGMRPPYPGPPPPQYGGQQRP-MMIPPPGGMMRGPPPPHGMQGPPPSRP 224
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 502 PPPPPXFXKXKXXXGXXGGXPXPPPXGGG 588
PPPPP F + G G P PPP G
Sbjct: 296 PPPPPQFLNHQQGFG--GPRPPPPPQAMG 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,344
Number of Sequences: 28952
Number of extensions: 334699
Number of successful extensions: 1176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3122616712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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