Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E06
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   4.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   4.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.5  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 182 EWFLTKFVTTFLPSLFEMR---VSGVIIFTFLRIL 87
           +WF TK  +  LPS+F++R     G+++   L I+
Sbjct: 16  KWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEII 50


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 202 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 291
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 175 FSRNSLPHSCPVCLKCESV 119
           F++N LPHS    LKC  V
Sbjct: 842 FNKNLLPHSLEFILKCSKV 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,682
Number of Sequences: 5004
Number of extensions: 53869
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)