Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E06
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20830.1 68416.m02634 protein kinase family protein contains ...    29   3.2  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    29   5.7  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    28   9.9  

>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 749 PIRKPPFPXRWPIH*CRKNXPHL 681
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 197 GIPPLEWFLTKFVTTFLPSLF 135
           GIP L  FLTK +T  LP LF
Sbjct: 344 GIPVLSMFLTKLLTVDLPRLF 364


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 179 WFLTKFVTTFLPSLFEMRVSGV 114
           WFL+ F++ F   + EMR SGV
Sbjct: 879 WFLSLFLSIFATGILEMRWSGV 900


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,805
Number of Sequences: 28952
Number of extensions: 278494
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)