Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E04
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.88 
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.7  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    26   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -1

Query: 723 SDVTAYXXASTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLWLS 544
           S  TA   +S++  IS    + S PTSTS T+ S  +S SS  +    +S  S++    S
Sbjct: 259 SSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFS 318

Query: 543 S 541
           S
Sbjct: 319 S 319



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -1

Query: 696 STAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGL----WLSSGCFC 529
           ST+  IS    + S PTSTS T+ S  +S SS  + +   S+ S++        SS    
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344

Query: 528 FSGKVIFNTSFS*TQLPSEFTS 463
            S     ++SFS T   S+ +S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSS 366


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 129 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 224
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 203 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 382
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 383 VKAKN 397
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 167  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 322
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 524  LKQKQPEDSQRPVAEPTETTSTNVSREEMEFTTESNVRDVD 646
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +2

Query: 524 LKQKQPEDSQRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAXKTNEIAKAVEAX 703
           +K+K  E S + + +  E T  ++ +EE +   +  +   D G  +A   NE  +A +  
Sbjct: 152 MKEKDNE-SDKTMKDVEEKTEPSLKKEEEDIQMKEPLDSQDTGAVSASSVNEGFRADQKS 210

Query: 704 XYAVTSETMR 733
               TS+ ++
Sbjct: 211 KDGETSDLIK 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,090
Number of Sequences: 5004
Number of extensions: 62534
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)