Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E04
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.30
05_03_0515 + 14930736-14932697 30 2.1
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 3.7
11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964... 29 3.7
07_01_0229 - 1672126-1673976,1674427-1675404 29 3.7
04_04_0347 + 24564589-24565296 29 3.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 4.9
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488... 29 6.5
07_01_0227 - 1663375-1665405 28 8.6
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 8.6
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 290 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 388
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>05_03_0515 + 14930736-14932697
Length = 653
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 89 IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 265
+ L +C + V +P + +W YH + YV +S+ ++ S WSN + L
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367
Query: 266 NMMKE 280
+ +
Sbjct: 368 SCFSD 372
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 302 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 460
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>11_06_0489 -
24196037-24196105,24196199-24196279,24196358-24196438,
24196513-24196614,24196693-24196782,24196865-24196945,
24197021-24197122,24197198-24197287,24197368-24197448,
24197524-24197622,24197720-24198055,24198142-24198228,
24198318-24198413,24198499-24198732,24198792-24199036,
24199119-24199383
Length = 712
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 527 KQKQPEDSQRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAXKTNEIAKAVEAXX 706
K + QR + + + +E +E + V D+DV E K +E KAV
Sbjct: 253 KNSESAKQQRNLHTTGRKSHARLCKEMVEAKVKGKVHDIDVWDEAHKKKDERIKAVVESA 312
Query: 707 YAVTSETMRSSC 742
Y ++ +SC
Sbjct: 313 YHELAKKKSTSC 324
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -1
Query: 708 YXXASTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 556
Y +T ++L + +++PT +TLLS+ ++S+ LT V V + +ATG
Sbjct: 479 YDGEATWIDVALAPFKMARPT---KTLLSMSYNLSAVLTNVAYVGLSAATG 526
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 86 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 187
M L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 197 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 346
+++++L+ LA+E+Q D+++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>11_06_0296 +
22046649-22048202,22048524-22048703,22048811-22048860,
22049443-22049564,22051007-22051119,22051227-22051436,
22052152-22052265,22052529-22052658,22053010-22053143,
22053997-22054077,22054181-22054267
Length = 924
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 122 VSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPS 301
++ A +++ G++ W + S +DT SLW +L N +H + ++L S
Sbjct: 376 ITDAVRFFKGNNSWSFLICPLSSRCDGRKFVDTSSLWGHLCN--KHPEGHWRKLQSVLGS 433
Query: 302 IINEGRVEGD 331
++E GD
Sbjct: 434 KLSENTSVGD 443
>07_01_0227 - 1663375-1665405
Length = 676
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 708 YXXASTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGL 553
Y +T ++L + +P R LLSVV+++S+ LT + S+TGL
Sbjct: 203 YDGNATQIDVTLAPLGIGRP---KRPLLSVVHNLSTVLTDQAYLGFSSSTGL 251
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +2
Query: 68 VERSTRMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLAN 247
V T ++ L++C +L ++ + G++ + D SP+ D ++ WS+ +N
Sbjct: 75 VSNKTVIVTLLVCVILTTIA-----FLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSN 129
Query: 248 EMQH 259
+ H
Sbjct: 130 LVSH 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,603,102
Number of Sequences: 37544
Number of extensions: 468289
Number of successful extensions: 2228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2192
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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