Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E03
(878 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 124 8e-29
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 120 1e-27
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 119 2e-27
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai... 29 5.4
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 29 5.4
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 29 5.4
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 29 5.4
At5g16940.1 68418.m01985 expressed protein contains Pfam profile... 28 9.5
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 124 bits (299), Expect = 8e-29
Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 79 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 258
MTKGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 259 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 357
MR+L+ V RRF+ GF+EG P+ K VASS
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 120 bits (290), Expect = 1e-27
Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = +1
Query: 79 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 258
M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 259 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 357
MR+L+ V RRF+ GF+EG P+ KA ASS
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASS 94
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 119 bits (287), Expect = 2e-27
Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = +1
Query: 79 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 258
M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 259 XXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 357
MR+L+ V RRF+ F+EG + TP KA ASS
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94
>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain
Length = 215
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 127 TLCRRCGRSSYHIQK-SKCAQCGY 195
T C RCG +YH Q + C CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 67 RSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 189
R K+ + T+S +R+ K + C RCG++ + K C C
Sbjct: 154 RERKVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 67 RSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 189
R K+ + T+S +R+ K + C RCG++ + K C C
Sbjct: 154 RERKVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 552 FTNKAFFSLHFSCGLS 505
+ N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919
>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
PF04828: Protein of unknown function (DUF636)
Length = 135
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 34 FLKXLISFGLSRSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKS 174
F+ +F L K T +FG K HT C+ CG +S++I +S
Sbjct: 45 FIVPSSNFELLDDSKDFITTYTFGTHTAK-HTFCKVCGITSFYIPRS 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,841
Number of Sequences: 28952
Number of extensions: 234072
Number of successful extensions: 484
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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