Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E02
         (1327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.004
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.27 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 36/165 (21%), Positives = 43/165 (26%), Gaps = 3/165 (1%)
 Frame = +2

Query: 527  PXXSSRXGSYPAXXAXXLXSSPXPXXPPXXHRSAXXTXXXXXXX---PGXPAAAXQXXPP 697
            P      G  P        S P P  PP  + +              P  P +A      
Sbjct: 316  PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375

Query: 698  XPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXX 877
             PP+        P   P  +   +   P   P   A      P P  P       P    
Sbjct: 376  PPPLSSSRAVSNPPAPPPAIPGRSA--PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433

Query: 878  XPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXP 1012
              P  L    P   P PP          G P   P PP +PA  P
Sbjct: 434  SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +2

Query: 902  AXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
            A P   P PP       P   AP     PP SPA  P  P    P
Sbjct: 122  AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166



 Score = 29.9 bits (64), Expect = 0.82
 Identities = 31/129 (24%), Positives = 35/129 (27%), Gaps = 1/129 (0%)
 Frame = +2

Query: 659  PGXPAAAXQXXPPXP-PI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPL 835
            P  P    +  PP   P  P      P  +P  +   A   P  LP P      V   P 
Sbjct: 128  PAPPTPQSELRPPTSAPPRPSIPPPSPASAPP-IPSKAPPIPSSLPPPAQPAAPVKSPPS 186

Query: 836  XPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPX 1015
             P       P     PP  L +A        P        H  AP      P  P   P 
Sbjct: 187  APSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGH--APNVTSESPKFPNRGPS 244

Query: 1016 XPXHXXPRV 1042
             P    P V
Sbjct: 245  IPSASVPPV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,116
Number of Sequences: 5004
Number of extensions: 15046
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)