BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_E02 (1327 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 35 0.15 U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.26 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 1.0 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 1.0 AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 2.4 AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 2.4 AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 2.4 Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 4.2 U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 30 4.2 Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.6 Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 29 5.6 Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6 Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6 >U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hedgehog-like family)protein 7 protein. Length = 401 Score = 34.7 bits (76), Expect = 0.15 Identities = 44/194 (22%), Positives = 53/194 (27%), Gaps = 4/194 (2%) Frame = +2 Query: 551 SYP-AXXAXXLXSSPXPXXPPXXHRSAXXTXXXXXXXPGXPAAAX--QXXP-PXPPI*PX 718 +YP + A P P PP + P P A Q P P PP P Sbjct: 13 TYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPY 72 Query: 719 XXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLV 898 P +P + P P P +P P P P P Sbjct: 73 PQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPA---PYPQHAVPAPAPYQ 129 Query: 899 RAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXXPXHXXPRVXLXXHXXSLINX 1078 + P P PP H PH PP PA H PR H Sbjct: 130 QQPP--PPPPPPHYPPPPPHY--------PPPPPAPHSAYIDHSAPRPAYIEHSAPPPQP 179 Query: 1079 HIXHKSPWRXPXTR 1120 + P + P R Sbjct: 180 QYPQQQPPQYPQQR 193 >U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein R04E5.8a protein. Length = 997 Score = 33.9 bits (74), Expect = 0.26 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Frame = +2 Query: 824 PXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXP-PXHXXGXXPHLGAPXXXPSP-PXS 997 P P PR SR PP R+ R P P P P P PSP P + Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRN 182 Query: 998 PAXXPXXPXHXXP 1036 P P P P Sbjct: 183 PPRTPPSPIPPPP 195 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 31.9 bits (69), Expect = 1.0 Identities = 28/126 (22%), Positives = 33/126 (26%) Frame = +2 Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838 P P + PP PP P S P P P G +P P Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPP 321 Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXX 1018 P PP +R P PP P + P PP P+ Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI 381 Query: 1019 PXHXXP 1036 P P Sbjct: 382 PPPPPP 387 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 31.9 bits (69), Expect = 1.0 Identities = 28/126 (22%), Positives = 33/126 (26%) Frame = +2 Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838 P P + PP PP P S P P P G +P P Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPP 331 Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXX 1018 P PP +R P PP P + P PP P+ Sbjct: 332 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI 391 Query: 1019 PXHXXP 1036 P P Sbjct: 392 PPPPPP 397 >AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. Length = 468 Score = 30.7 bits (66), Expect = 2.4 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Frame = +2 Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036 PP L P P PP G P H GAP P PP P P P Sbjct: 203 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 256 >AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated protein 34, isoform b protein. Length = 310 Score = 30.7 bits (66), Expect = 2.4 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Frame = +2 Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036 PP L P P PP G P H GAP P PP P P P Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 242 >AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated protein 34, isoform a protein. Length = 454 Score = 30.7 bits (66), Expect = 2.4 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%) Frame = +2 Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036 PP L P P PP G P H GAP P PP P P P Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 242 >Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein Y49E10.10 protein. Length = 425 Score = 29.9 bits (64), Expect = 4.2 Identities = 18/71 (25%), Positives = 22/71 (30%) Frame = +2 Query: 830 PLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXX 1009 P P T P PP P PP AP P+P +PA Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPN 234 Query: 1010 PXXPXHXXPRV 1042 P P + +V Sbjct: 235 PPAPENTTAKV 245 >U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical protein T17H7.1 protein. Length = 682 Score = 29.9 bits (64), Expect = 4.2 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -1 Query: 856 GARGAGVXGXGXDFGPXREGXREXG 782 G G G G G DFGP R+G R G Sbjct: 397 GPGGRGGRGQGPDFGPGRQGGRGQG 421 >Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein E02A10.2 protein. Length = 385 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 62 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 104 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 146 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGG 188 >Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical protein T06E4.12 protein. Length = 228 Score = 29.5 bits (63), Expect = 5.6 Identities = 32/118 (27%), Positives = 36/118 (30%) Frame = +2 Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838 P A A PP PP+ P PR + P P P+ VL P Sbjct: 103 PVLAAPAPFLAPPVPPVAPIVSAFAPR--------PVLAAPAFAPAPILAPRPVLAAPAI 154 Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXP 1012 P + P P R V A P P P L AP P PA P Sbjct: 155 PAFA----PAPLLAP--RPVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAVPAAIP 206 >Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 80 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 100 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGG 142 Score = 28.7 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 17/52 (32%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880 G C G G C G GG G G G G G G + GG Sbjct: 107 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158 Score = 28.7 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 16/52 (30%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880 G C G G C G GG G G G GG G GG Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165 >Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 80 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/43 (34%), Positives = 15/43 (34%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907 G C G G C G GG G G G GG G G Sbjct: 100 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGG 142 Score = 28.7 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 17/52 (32%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880 G C G G C G GG G G G G G G + GG Sbjct: 107 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158 Score = 28.7 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 16/52 (30%) Frame = -2 Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880 G C G G C G GG G G G GG G GG Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,259,748 Number of Sequences: 27780 Number of extensions: 128174 Number of successful extensions: 334 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 310 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 3715184046 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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