Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E02
(1327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 35 0.15
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.26
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 1.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 1.0
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 2.4
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 2.4
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 2.4
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 4.2
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 30 4.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 29 5.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.6
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 34.7 bits (76), Expect = 0.15
Identities = 44/194 (22%), Positives = 53/194 (27%), Gaps = 4/194 (2%)
Frame = +2
Query: 551 SYP-AXXAXXLXSSPXPXXPPXXHRSAXXTXXXXXXXPGXPAAAX--QXXP-PXPPI*PX 718
+YP + A P P PP + P P A Q P P PP P
Sbjct: 13 TYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPY 72
Query: 719 XXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLV 898
P +P + P P P +P P P P P
Sbjct: 73 PQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPA---PYPQHAVPAPAPYQ 129
Query: 899 RAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXXPXHXXPRVXLXXHXXSLINX 1078
+ P P PP H PH PP PA H PR H
Sbjct: 130 QQPP--PPPPPPHYPPPPPHY--------PPPPPAPHSAYIDHSAPRPAYIEHSAPPPQP 179
Query: 1079 HIXHKSPWRXPXTR 1120
+ P + P R
Sbjct: 180 QYPQQQPPQYPQQR 193
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.26
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Frame = +2
Query: 824 PXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXP-PXHXXGXXPHLGAPXXXPSP-PXS 997
P P PR SR PP R+ R P P P P P PSP P +
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRN 182
Query: 998 PAXXPXXPXHXXP 1036
P P P P
Sbjct: 183 PPRTPPSPIPPPP 195
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 1.0
Identities = 28/126 (22%), Positives = 33/126 (26%)
Frame = +2
Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838
P P + PP PP P S P P P G +P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPP 321
Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXX 1018
P PP +R P PP P + P PP P+
Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI 381
Query: 1019 PXHXXP 1036
P P
Sbjct: 382 PPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 1.0
Identities = 28/126 (22%), Positives = 33/126 (26%)
Frame = +2
Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838
P P + PP PP P S P P P G +P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPP 331
Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXX 1018
P PP +R P PP P + P PP P+
Sbjct: 332 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI 391
Query: 1019 PXHXXP 1036
P P
Sbjct: 392 PPPPPP 397
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +2
Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
PP L P P PP G P H GAP P PP P P P
Sbjct: 203 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +2
Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
PP L P P PP G P H GAP P PP P P P
Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +2
Query: 881 PPXRLVRAXPXXXPXPPXHXXGXXP---HLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
PP L P P PP G P H GAP P PP P P P
Sbjct: 189 PPVPLTSNIPQAPPAPPPPIGGIAPVNAH-GAPPPPPLPPVGAGAPPPPPPPPPP 242
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/71 (25%), Positives = 22/71 (30%)
Frame = +2
Query: 830 PLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXX 1009
P P T P PP P PP AP P+P +PA
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPN 234
Query: 1010 PXXPXHXXPRV 1042
P P + +V
Sbjct: 235 PPAPENTTAKV 245
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 856 GARGAGVXGXGXDFGPXREGXREXG 782
G G G G G DFGP R+G R G
Sbjct: 397 GPGGRGGRGQGPDFGPGRQGGRGQG 421
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 62 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 104
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 146 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGG 188
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 29.5 bits (63), Expect = 5.6
Identities = 32/118 (27%), Positives = 36/118 (30%)
Frame = +2
Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLX 838
P A A PP PP+ P PR + P P P+ VL P
Sbjct: 103 PVLAAPAPFLAPPVPPVAPIVSAFAPR--------PVLAAPAFAPAPILAPRPVLAAPAI 154
Query: 839 PRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXP 1012
P + P P R V A P P P L AP P PA P
Sbjct: 155 PAFA----PAPLLAP--RPVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAVPAAIP 206
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 100 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGG 142
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880
G C G G C G GG G G G G G G + GG
Sbjct: 107 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880
G C G G C G GG G G G GG G GG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXG 907
G C G G C G GG G G G GG G G
Sbjct: 100 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGG 142
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880
G C G G C G GG G G G G G G + GG
Sbjct: 107 GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -2
Query: 1035 GXXCXGXXGXCAGEXGGLGXXXGAPRWGXXPXXWXGGXGXXXGXARTXRXGG 880
G C G G C G GG G G G GG G GG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,748
Number of Sequences: 27780
Number of extensions: 128174
Number of successful extensions: 334
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3715184046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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